Plant FIBer expression Database

Lus10043118 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55060 606 / 0 unknown protein
AT5G58510 153 / 4e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032631
[exp]
1021 / 0 AT5G55060 643 / 0.0 unknown protein
Lus10040061
[exp]
822 / 0 AT5G55060 753 / 0.0 unknown protein
Lus10000118
[exp]
484 / 1e-170 AT5G55060 319 / 1e-106 unknown protein
Lus10021546
[exp]
243 / 2e-75 AT5G55060 170 / 3e-48 unknown protein
Lus10031287
[exp]
150 / 4e-38 AT5G58510 1122 / 0.0 unknown protein
Lus10031857
[exp]
106 / 7e-25 AT5G58510 468 / 2e-158 unknown protein
Lus10020371
[exp]
64 / 1e-10 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10031851
[exp]
42 / 0.0009 AT5G58510 109 / 2e-27 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G089300
[exp]
680 / 0 AT5G55060 770 / 0.0 unknown protein
Potri.009G076000
[exp]
132 / 4e-32 AT5G58510 1237 / 0.0 unknown protein
Potri.001G280832
[exp]
52 / 1e-07 AT5G58510 164 / 3e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10043118 pacid=23168443 polypeptide=Lus10043118 locus=Lus10043118.g ID=Lus10043118.BGIv1.0 annot-version=v1.0
ATGGCTCTCGCATTTTATGACGAAAATTTGTACATACTGAACAAGAAAAATGATGCCGAGATCAAGGCTTCACAAGTACCTTATATAGCAGAAAGATTAT
CTGCCACTAGTTCAGACAGCATTCCCCCATCATCTGTCATGAAGCAATTAGCTAGCGCTATTGACACGGGGAAGAAGTACAAGTCAATAAAAGATCTTGT
GATGGTCTCTTCTGAAAGTTCATCACCAATCAAGGAAAGGACAGGTTTAAGCCTTGCTGCTGTAAAGTCATTTGTACTTCGGGACAAGGATGATAAGCTT
GCATCTGAATTTGAGAACCACGAAAAACTTCTGTTCATCATGCAGTCATTGTTCCGTGCAGAGGGAGACTTTCTCAGGAGGAACGTTTGCTGTAGCATGG
AGTCGTTAACACTGAGTAAAGACATTCATGGTGCACCTCCAGACAGCCTCCTTGTAAAGCTATCTGAAGTAATTGGAAGCTTTAAATCATTGCAGAATAT
GGCCACTTTTTGGTTCAAAATTGTTGCTGAGCTGAGACGGCTCTGGTTCGAAGAACTCCATGTACCTGGCATTCCTCTGGATGAGCTTCCAGATCTTCAT
TCGTGCCTTCTATACCAGCAGTTGCAGGTTATCAACTGTTGTGTTTCGAGGAAAAAGCGCCATGCACTTGCTTCTGAATCACTGGAAGTTATATTAAAGG
ATGCGAGTGCAATCTCTGAAGAATCTTCTAAACGTGTAAATGCTCCCAGGCATTTATTATATGCCAGAACGAGTAGTGGAGAACTTGTTCTTCGCCTAGG
TGCAGATTCTAAGGCTCCTAACCTGCTCATGTTGGAAACTGGTGAACCAATATTCTCTCCTATCCCTCAGGAGCCGCCTTTGCTTACTGAAGATGTTATC
AAAGAAAATGAAGAATTTATTCTCCGGACTGGGAGTGTTGGTGCAGGGTGTTCTCAGCTACTCTCTGACATGCAAGGTTTCAAGGCTGCGAATCCTGGAT
GCATATTAGAAGATTTTGTGAGATGGCATTCTCCTCCTGACTGGACAAGCAGTGAAGAAACTGACGAGGCTAATGAGTCTTCTTCAGCTAGGGACGCTTC
ACCTTCAACAAGAGGTTATCTAAGTAGCCGAATGCAGAAAGAAGGAAACTTGTGGCGTGAACTATGGGAAACATCTAAGCCAATACCAGCGGTTAAACAA
GCTCCCCTTTTCGATGAGGATTTGGCTGTTGAGGGTATTTTGAATCACATGGAGAACATCCACCCTTCCGTACTTTTTGAACAGTTCTTCATTTCGCTAC
TCTGTCTGGGAACTCTAATGGCGGAGGCAAAACTTTCTAGCAACGATGATTTATCAAAGCTGTTTTACGAGTGTAAAGATTACATTGTTGTCACGTGCCA
AGGAATCCCATGGAGTGATAAAAAGGACGACCTTTGTCAAGTTTACGAGACAATGGAGGCTATGTTACTGAACCCTGATGAAGTTGTCAAAACAATAAAA
GCCACCACATCTGGTTCTGAAACCAAGCACACCAGCTTCCTGAAACTGGGTATGAAGTTCGGCAAGAAGAAGAGAAAACCATCGCCAAGATGCGAAAGCG
GCGGCTCTTCGGAGGAAAGCCCCACGATACAGCAGCAGCATTTCTATAAGAACAAGCCTCCTAAGCCAGGGACTGCATCACCTGGCGAAAAGACTCCTCC
CAACGAGGATAGTGAGTGGACACTCGTTTAA
AA sequence
>Lus10043118 pacid=23168443 polypeptide=Lus10043118 locus=Lus10043118.g ID=Lus10043118.BGIv1.0 annot-version=v1.0
MALAFYDENLYILNKKNDAEIKASQVPYIAERLSATSSDSIPPSSVMKQLASAIDTGKKYKSIKDLVMVSSESSSPIKERTGLSLAAVKSFVLRDKDDKL
ASEFENHEKLLFIMQSLFRAEGDFLRRNVCCSMESLTLSKDIHGAPPDSLLVKLSEVIGSFKSLQNMATFWFKIVAELRRLWFEELHVPGIPLDELPDLH
SCLLYQQLQVINCCVSRKKRHALASESLEVILKDASAISEESSKRVNAPRHLLYARTSSGELVLRLGADSKAPNLLMLETGEPIFSPIPQEPPLLTEDVI
KENEEFILRTGSVGAGCSQLLSDMQGFKAANPGCILEDFVRWHSPPDWTSSEETDEANESSSARDASPSTRGYLSSRMQKEGNLWRELWETSKPIPAVKQ
APLFDEDLAVEGILNHMENIHPSVLFEQFFISLLCLGTLMAEAKLSSNDDLSKLFYECKDYIVVTCQGIPWSDKKDDLCQVYETMEAMLLNPDEVVKTIK
ATTSGSETKHTSFLKLGMKFGKKKRKPSPRCESGGSSEESPTIQQQHFYKNKPPKPGTASPGEKTPPNEDSEWTLV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G55060 unknown protein Lus10043118
[exp]
0 1
AT5G17570 TatD related DNase (.1) Lus10017234
[exp]
1.4 0.8567
AT1G47128 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A,... Lus10024801
[exp]
3.2 0.8486
AT1G58250 SAB SABRE, Golgi-body localisation... Lus10002604
[exp]
3.9 0.7959
AT5G22850 Eukaryotic aspartyl protease f... Lus10021397
[exp]
5.0 0.8345
AT3G63150 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-... Lus10022034
[exp]
6.5 0.7861
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Lus10031190
[exp]
6.9 0.7933
AT2G45510 CYP704A2 "cytochrome P450, family 704, ... Lus10009232
[exp]
7.3 0.8454
AT5G01990 Auxin efflux carrier family pr... Lus10035610
[exp]
8.5 0.8071
Lus10007724
[exp]
9.5 0.7762
AT5G01450 RING/U-box superfamily protein... Lus10002487
[exp]
10.8 0.8446

Lus10043118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.