Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43330 453 / 4e-157 ATINT1 inositol transporter 1 (.1) AT1G30220 247 / 5e-76 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 239 / 6e-73 ATINT3 nositol transporter 3 (.1) AT4G16480 234 / 5e-71 ATINT4 inositol transporter 4 (.1) AT5G16150 149 / 1e-39 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT3G18830 141 / 4e-37 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 139 / 2e-36 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 134 / 1e-34 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G18480 134 / 2e-34 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 132 / 9e-34 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025565 [exp] 533 / 0 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 531 / 0 AT2G43330 769 / 0.0 inositol transporter 1 (.1) Lus10028118 [exp] 257 / 1e-79 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 256 / 2e-79 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017559 [exp] 240 / 1e-73 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10010501 [exp] 237 / 3e-72 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 233 / 1e-70 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 231 / 1e-69 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 226 / 4e-68 AT4G16480 760 / 0.0 inositol transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126800 [exp] 483 / 4e-169 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 478 / 4e-167 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.016G010600 [exp] 243 / 2e-74 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 238 / 8e-73 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 236 / 6e-72 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.017G032400 [exp] 200 / 1e-62 AT2G43330 272 / 8e-90 inositol transporter 1 (.1) Potri.004G133340 [exp] 177 / 6e-53 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.017G032600 [exp] 174 / 2e-52 AT2G43330 0 / 1 inositol transporter 1 (.1) Potri.009G113600 [exp] 153 / 4e-41 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G097800 [exp] 149 / 9e-40 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10043120 pacid=23168136 polypeptide=Lus10043120 locus=Lus10043120.g ID=Lus10043120.BGIv1.0 annot-version=v1.0 ATGGTGGGAGCGGCATGTGGAGGATGGATTAATGATGAATACGGACGGAAGAGAGCTACTCTTGTTGGTGATGTGGTGTTCACTTGTGGATCAATAGTGA TGGCTGCAGCACCAGATCCGTACGTGCTCATCCTGGGACGCCTTTTAGTTGGATTTGGTGTTGGTTTGGCATCAGTCACTGCTCCTCTGTATATCGCTGA AGCATCTCCATCAGAAGTCAGGGGAAGTTTAGTCAGCACAAATGTTCTCATGATCACTGCTGGACAATTTCTTTCCTATCTTGTAAATCTCGCCTTTACC CAGATTCCAGGAACCTGGCGGTGGATGCTAGGGGTTGCAGCTGTCCCGGCGGTCATCCAGTTCTGCTTAATGCTCTTCATGCCAGAGTCTCCTAGATGGC TTTTCATCAAGAATGATGAAACCAAGGCAATTTCAATACTTGCGAGGATATATGACATCCATAGATTGGAGGAAGAGATTGAACATCTCTCAGCTGCTTC TATGGGTGATGACCGCAACAACAGAGTCACTTACTTTGATGTCTTCAAAACTAGAGAAATTCGACTTGCATTCCTTGCTGGCGCAGGACTTCAGGCTTTT CAGCAGTTGATAGGCATAAACACAGTAATGTACTACAGCCCGACCATAGTCCAAATGGCTGGCTTCTCTTCTAACCAACTAGCCCTCGTCCTTTCCTTGG TAGTCGCTGCGATGAACGCTGCCGGATCAATTCTAGGCATTTACCTGATCGACCATTTCGGGAGGAAGAAGTTGGCGCTCTCAAGTTTAGCTGGCGTGAT TGTATCACTCGTAATCCTGTCCAGCGCATTCTACGGCCAATCTGCAGCTGGTTCATCAAGCAGTACTGGCAGCGGGTTGTTTGGATGGATGGCTGTGATT GGGTTGGTACTATACATTGCCGCCTTCTCGCCTGGAATGGGGCCGGTACCATGGACTGTCAACTCGGAGATATATCCGCCCAAGTACACGAGTATCTGCG GAGGGATGTCAGCAACCATCAACTGGGTTTCAAACTTTATAGTGGCCCAGAGCTTTCTCTCCATTGCTCATGTTTCAGGGGCCGCTACCACTTTCCTGAT CCTCGCTGCTTTAGCTGTAGCTGCGGTCGGGTTCGTTGCTGTGTTTGTGCCTGAAACCAAAGGTTTAACGTTTGTAGAAATGGAACGGATATGGAAGGAA CGAGCCTGGGGAAGTGATGAGTACAACTCGGAAAGCCTTCTGGAATGA
AA sequence Show only first row Show all	>Lus10043120 pacid=23168136 polypeptide=Lus10043120 locus=Lus10043120.g ID=Lus10043120.BGIv1.0 annot-version=v1.0 MVGAACGGWINDEYGRKRATLVGDVVFTCGSIVMAAAPDPYVLILGRLLVGFGVGLASVTAPLYIAEASPSEVRGSLVSTNVLMITAGQFLSYLVNLAFT QIPGTWRWMLGVAAVPAVIQFCLMLFMPESPRWLFIKNDETKAISILARIYDIHRLEEEIEHLSAASMGDDRNNRVTYFDVFKTREIRLAFLAGAGLQAF QQLIGINTVMYYSPTIVQMAGFSSNQLALVLSLVVAAMNAAGSILGIYLIDHFGRKKLALSSLAGVIVSLVILSSAFYGQSAAGSSSSTGSGLFGWMAVI GLVLYIAAFSPGMGPVPWTVNSEIYPPKYTSICGGMSATINWVSNFIVAQSFLSIAHVSGAATTFLILAALAVAAVGFVAVFVPETKGLTFVEMERIWKE RAWGSDEYNSESLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	3.7	0.8234
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	6.0	0.8540
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	7.2	0.7338
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	8.0	0.7600
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	8.7	0.7668
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	13.6	0.7847
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	16.6	0.7796
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10037329 [exp]	17.0	0.7352
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	19.6	0.7782
					Lus10006164 [exp]	21.5	0.7765

Compare expression of checked genes

Lus10043120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.