Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55040 434 / 1e-137 DNA-binding bromodomain-containing protein (.1.2) AT1G20670 221 / 2e-61 DNA-binding bromodomain-containing protein (.1) AT1G76380 209 / 8e-58 DNA-binding bromodomain-containing protein (.1.2.3) AT3G01770 66 / 1e-10 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 62 / 1e-09 DNA-binding bromodomain-containing protein (.1) AT3G27260 62 / 2e-09 GTE8 global transcription factor group E8 (.1.2) AT5G14270 59 / 1e-08 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G63320 57 / 3e-08 NPX1 nuclear protein X1 (.1.2.3) AT1G32750 57 / 5e-08 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT2G34900 56 / 6e-08 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032629 [exp] 1239 / 0 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10013220 [exp] 227 / 2e-63 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 224 / 2e-62 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10022999 [exp] 213 / 9e-60 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 209 / 2e-58 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10018900 [exp] 59 / 7e-09 AT2G34900 254 / 2e-84 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10017661 [exp] 59 / 2e-08 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10008553 [exp] 59 / 2e-08 AT1G32750 1623 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10033623 [exp] 59 / 2e-08 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206200 [exp] 247 / 6e-70 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 239 / 8e-68 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 237 / 2e-66 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 228 / 2e-63 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 123 / 1e-28 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 108 / 4e-24 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 108 / 5e-24 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 65 / 2e-10 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 63 / 6e-10 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 62 / 1e-09 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10043121 pacid=23168055 polypeptide=Lus10043121 locus=Lus10043121.g ID=Lus10043121.BGIv1.0 annot-version=v1.0 ATGGGCCAGATCGTGAAAGGGAAGAAGAAAGGAAGGCCATCCAAGGCAGATCTAGCCCGTCGAGCTGCCTCCGGTGCTTCTCCTGCCGGTTCCGAACGAC GCCGCAGCCTCCGTCGCCGGAATGTCAGGTACAACAACTTCATCGACATCGACGATTACCTGGATGACTTCGAGGAGTACGACCAGCCCGAGGATGAGGA AGACGAGCCTGAGCCCGAGGAAGAAGAGGAAGACGACGATGAAGATGATGATGAGGAGGAAGATGAGAGGAGGAAACAGAAGAAGCTCAAGCTGGCGTCT CTGAAACTCAACAACCAAAGTCAAAGCCGCCGCCACCGCCACAACAACAACGGCAGGGCGGCGCGTGGAGGTCACTCTCGAAGTGAGGCCGGGATGACCT CTGCTTCTGAAGACGAGGAGGAGGATGGAGGGAGCGAGAGGAAGCGGCCGACAAAGAAGAAGAGGAGAACGATCAACGGCTACGGCGGCCGTGAGAGTGA AACTGAGGAAGTCGGGAGTGAGAATGACGGTGGAAATGACGGAGAAGAAGAGGAAGAAGAGGAGATTGATCCAGAGGAAACGGAAAGGAAATCCGATGGT AAAGGGCAGCAGCAGGACTCAGAGCCAGGGACACCGCCTGTTCGTCTGGATTCTTATCCCTTGCCGGACAAGAAAGTGCTGGAGTTGGTACTGGACAAGC TTCAAAAGAAGGATACATATGGTGTTTACTCTGAACCAGTGGATCTGGAGGAGCTTCCGGATTATCTCGATACGATTGATCAGCCAATGGACTTTGCCAC TGTACGAGAAAAACTTGGAAATGGCTCTTATGGCACGTTAGAGCAATTTGAGAGTGATGTATTTCTAATTTGCTCGAATGCAATGAAATATAATTCATCA GACACAATTTACCATAGACAGGCACGTGCCATCCAAGAGTTGGCAACAAAAAAGTTTGAAAAGATAAGAGTTGCAATTGAACGGTCAGAGAAGGACCAGA AGTCGGAACAGAAAACAAAGTCCAACACCTCGGCTAAAAAGCAGATGAAGAAGCCTTCCAATCGGACCATGCAAGATACTGCCGGGTCTGATTTTTCATC AGGTGCAACTCTTGCCAATGCTGGTCAGGTCCAGAATGGTTCCAATATAGAGATACTTCCAGAGAACAGCTTGTCTTTTGCTGATAATCACATAAAGAAA GTTGAAGAGCTATCATCAGGGAGGGGTCCTTTGTTCAAGAATGGGAAGAAACCGCCTGTCCTTGATGACTGCAGACGTGCAACATATAGCTCATGCAGTC AACCTCTTGAGAGATCAGACACAATCTTCACGACATTTGAAGATGAACTGAGGCATCTGATTGCTGTTGGGCTTCATGCAGAACATTTTTACTCAAGGAG CATGGCTCGCTTTGCTGCAAATCTAGGACCAGTAGCTTGGAAGGTGGCATCAAAAAGGATTGAGCAGGCTTTACCTCCTGGATGCAAATATGGCAGAGGA TGGGTGGCAGAATATGAGCCACTTACAACCCCGCTAATAATGTTTGCTCCGAAATACGATGTTTTGTTTCCCAAGGTAAAAGCTTCTGTTGATGGACAAA AGGGGGATATAGCGGAAGCCAAGGAACATCCAGCTCGAAAAATTGTTTCAGAAGGAAAGCATAGTGTGTTCCGTCCAACCAATGTGCTAGCCTCAGAAGT ACACAACTCATTGTTGCCCCCTACAGGAACTAAACCAATTCTCCAGAAAACTATGTCGCCAATGAATAATTCCGAGACTCGGAGTAAGACTTCCATGCAG GTTGAATTGAATTTGCCTCCTTCAATGAATCAGAACGATGAAGCTGTTAGAGAAAAGCAAATGTCCGTTAATTCAGAAATGGCAGCAGCTTCAAAGGTGA GAGAAGTGGCGAGATCAGAAGGTCTAACGCCAAGGGAAGTGTCTAAGCAACTGGACGATAATGGTAATAGTCCCAGACTGGTGCAGGATGGGAAAACCAC TAGCAGTTTCGCGAGTAGTAGACCAGTGATTGCATCATGTAATGGTTTTAACAAAGTGGCTCAAGTGGGAAGTAACCAAATGGTACGAGGAGCTGCTTAC TTCCCTCAGGTACAAGGACAGGTTCTCACAGACCCAGTGGAGGCAATGAGAAAATCCGCTGAAATGGTTCGAAATCAGCAGAAACCTTCAGGTCAGCCCT CAGGTGAGAATAATACACCAAGGAGCGACTCTAGCAACAATGCAGCTGTTGCTGCTGCCCGAGCATGGATGTCGGTAGGTGCCGGTAACTTTAAACCCCC GATCGAGGGTGGTACTAACCCTAAAGGAGGTCAGGTTCCGGCCGAGTACAACCCGGCATGGCAACTCGCTCCACAACTTCCACGAGTGCAAGGACAGTAT CCGGTACAGTACCAGTCTGAGAAGAACAACTTCCCATTTCAAGCATTCATGAGACCGCCTTTCCTCGGAGGAGCCGAGGCACAGTTGCAAGGCAGACCGA TGGTGTTCCCTCCTCAGTTAGTAGGCGCTTCCGACATGTCTAGGCTCCAGATGATCCCCCCTTGGAACGGCAGCAATCAAAGTCAAGAGCAGCATCCTCA GTTCCAGCAGAAGCAAAAACCGGACACACTCCCACCGGACTTGAACATTGGTTTCCAGTCTCCTGGATCTCCTGCGAAACAACAATCTTCAGGTGTTATG GTTGACTCGCAACAGCCTGACCTGGCATTACAACTCTAA
AA sequence Show only first row Show all	>Lus10043121 pacid=23168055 polypeptide=Lus10043121 locus=Lus10043121.g ID=Lus10043121.BGIv1.0 annot-version=v1.0 MGQIVKGKKKGRPSKADLARRAASGASPAGSERRRSLRRRNVRYNNFIDIDDYLDDFEEYDQPEDEEDEPEPEEEEEDDDEDDDEEEDERRKQKKLKLAS LKLNNQSQSRRHRHNNNGRAARGGHSRSEAGMTSASEDEEEDGGSERKRPTKKKRRTINGYGGRESETEEVGSENDGGNDGEEEEEEEIDPEETERKSDG KGQQQDSEPGTPPVRLDSYPLPDKKVLELVLDKLQKKDTYGVYSEPVDLEELPDYLDTIDQPMDFATVREKLGNGSYGTLEQFESDVFLICSNAMKYNSS DTIYHRQARAIQELATKKFEKIRVAIERSEKDQKSEQKTKSNTSAKKQMKKPSNRTMQDTAGSDFSSGATLANAGQVQNGSNIEILPENSLSFADNHIKK VEELSSGRGPLFKNGKKPPVLDDCRRATYSSCSQPLERSDTIFTTFEDELRHLIAVGLHAEHFYSRSMARFAANLGPVAWKVASKRIEQALPPGCKYGRG WVAEYEPLTTPLIMFAPKYDVLFPKVKASVDGQKGDIAEAKEHPARKIVSEGKHSVFRPTNVLASEVHNSLLPPTGTKPILQKTMSPMNNSETRSKTSMQ VELNLPPSMNQNDEAVREKQMSVNSEMAAASKVREVARSEGLTPREVSKQLDDNGNSPRLVQDGKTTSSFASSRPVIASCNGFNKVAQVGSNQMVRGAAY FPQVQGQVLTDPVEAMRKSAEMVRNQQKPSGQPSGENNTPRSDSSNNAAVAAARAWMSVGAGNFKPPIEGGTNPKGGQVPAEYNPAWQLAPQLPRVQGQY PVQYQSEKNNFPFQAFMRPPFLGGAEAQLQGRPMVFPPQLVGASDMSRLQMIPPWNGSNQSQEQHPQFQQKQKPDTLPPDLNIGFQSPGSPAKQQSSGVM VDSQQPDLALQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	0	1
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	1.4	0.7691
AT1G03910			unknown protein		Lus10027731 [exp]	2.8	0.7465
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10027323 [exp]	3.7	0.7069
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	9.6	0.7594
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	10.0	0.7373
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	10.4	0.7643
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	12.0	0.7105
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	24.9	0.7243
AT1G08410			P-loop containing nucleoside t...		Lus10013359 [exp]	28.2	0.6679
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	30.0	0.7001

Compare expression of checked genes

Lus10043121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.