Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24810 693 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50330 688 / 0 Protein kinase superfamily protein (.1.2) AT5G24810 184 / 2e-49 ABC1 family protein (.1.2) AT5G64940 147 / 2e-37 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 142 / 5e-36 Protein kinase superfamily protein (.1) AT5G05200 133 / 4e-33 Protein kinase superfamily protein (.1) AT3G07700 130 / 8e-32 Protein kinase superfamily protein (.1.2.3) AT2G40090 125 / 2e-30 ATATH9 ABC2 homolog 9 (.1) AT1G71810 125 / 5e-30 Protein kinase superfamily protein (.1) AT4G31390 120 / 2e-28 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032628 [exp] 972 / 0 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026970 [exp] 197 / 1e-53 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 187 / 2e-50 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 171 / 4e-45 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10036636 [exp] 145 / 1e-36 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10012865 [exp] 133 / 3e-33 AT5G05200 680 / 0.0 Protein kinase superfamily protein (.1) Lus10006363 [exp] 133 / 1e-32 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035853 [exp] 133 / 2e-32 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10012317 [exp] 133 / 3e-32 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091000 [exp] 753 / 0 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 728 / 0 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G276600 [exp] 193 / 2e-52 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003400 [exp] 186 / 6e-50 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 182 / 1e-49 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.007G082500 [exp] 143 / 7e-36 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 142 / 8e-36 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.005G083200 [exp] 141 / 4e-35 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.019G061300 [exp] 130 / 3e-32 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 129 / 2e-31 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10043122 pacid=23168018 polypeptide=Lus10043122 locus=Lus10043122.g ID=Lus10043122.BGIv1.0 annot-version=v1.0 ATGTTTCCTCTTCCTCCTCCTCTCCATCCTGACTTGAAGCACCTTCAGGACAAGCTCTCCGCTTCCATTCTCCCTTGGCAACGTTCTTTCCATTTCTGGG TTCGCACCGCCAATATCTACGCCGGCTACAAGGCTTTCCAATTCCGAGTCAGTTTTGTCAAGGATGTCCAGAAGCAGGAAGCAATGTGGGAACGCCAGCA TGAGCTTGCTGCTCATAAGATCTACTCCTTGTGCTCTGATCTTGGCGGCTTCTTCCTCAAGGTTGCTCAAATCATTGGGAAGCCTGACTTGGCTCCAGCT GCATGGGTTAAACGCCTTGTTACCTTGTGTGACCAAGCTCCTGCTACTCCTTACCACACCGTCCGGCTTGTTCTCGAGAATGAATTAGGTCAAAGCTTAG ATGACATTTTTTATCGGTTTGACATGGAACCCCTTGGTTCTGCTTCCATTGCACAGGTTCATCTCGCTAGATTGAAAGGTGATAATACTGATGTCGTTGT CAAGGTGCAACATCCTGGTATTGAGGATCTGATGATGACAGACATCCGTAACTTGCAAGCATTTGCTTGCTACATGCAGAAGACTGATATCAAGTTCGAT TTGTACTCAATAACTAAAGAGATGGAGAAGCAGATTGGATATGAATTTGACTTCGCTAGAGAGGCTGAAGCAATGCATAGGATCCGCCAATTTCTGTACG AGAACAACAAAAAAAGTCCTGTCCTTGTCCCCCGTGTAATGAAGGATATAGTCACCAGGAGGGTCTTGGTAATGGAATACATGGATGGTATCCCAATTTT AAATCTTGGCGACGAAATGGGCAAAAGAGGAATAAATCCAGGCGGGAAGATAGCAGCAGCTGCAAAGCTGAACATACTTGAAAGCTTAACGCTCGCGTAT GGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCCGATCCCCATCCAGGAAACATTTTGATATGTAAAGGTTCACAGGCATGTCCACATCTGATATTCT TTACTTATTTTCACCATGCAATCTGTGCATTTGTTGTTTATCTTGCATTTGTTTGCTTTCCAATGGTAGCCTTGCTAGACTATGGGCAAGTGAAGGACCT CCCAGATGATTTAAGGCTTGGATATGCAGAATTGGTACTTGCTATTGCTGATAACGATCTGCTGGGAGCAAAACAGAGCTACAAGAAGTTGGGAATCAAA ACCTTAAGCAATTGTGGCGCTGATGAAGACCGGGAAATGCTAAGGTTGGCGCAGACAATGTTTGACTCAAAATTACCCCATGGGGTTGAAATGTTGCAGC CTTTCTCTGACGATTCTTCACTTAAAAAGTTGTCTGTTCAGGCCTTCCCGGAGGAGCTATTTTCGATACTTCGGACAGTACATCTATTGAGAGGGCTTAG TGTTGGTCTGGGGCTAAACTACTCGTGTGCAGAACAGTGGAGACCCATTGCAGAAGAAGCATTGTATGGTGCTGGCAGATTGAAAGGTGAGCTTTCTGAA ACATCCATGCCTCCATCTACTTTCCAGGCCTTCGTCAGGGCTCTGTTAACACTTCACTTGACTGTGGCTTTGAGTTCCAGATGGAGACCGGAGAATTCCA GTTCAAAGACGTGGATTCTTGCGGAGATTATTTCACAGGAATACATGAACTTGGCAAACAATATGTATAGTGCTCGCCGCTCCCAGTCTTGCGTCCAGCG TATGGATATCGTTATGGATATGACGCCTCCGGATTAG
AA sequence Show only first row Show all	>Lus10043122 pacid=23168018 polypeptide=Lus10043122 locus=Lus10043122.g ID=Lus10043122.BGIv1.0 annot-version=v1.0 MFPLPPPLHPDLKHLQDKLSASILPWQRSFHFWVRTANIYAGYKAFQFRVSFVKDVQKQEAMWERQHELAAHKIYSLCSDLGGFFLKVAQIIGKPDLAPA AWVKRLVTLCDQAPATPYHTVRLVLENELGQSLDDIFYRFDMEPLGSASIAQVHLARLKGDNTDVVVKVQHPGIEDLMMTDIRNLQAFACYMQKTDIKFD LYSITKEMEKQIGYEFDFAREAEAMHRIRQFLYENNKKSPVLVPRVMKDIVTRRVLVMEYMDGIPILNLGDEMGKRGINPGGKIAAAAKLNILESLTLAY GQMILKSGFFHADPHPGNILICKGSQACPHLIFFTYFHHAICAFVVYLAFVCFPMVALLDYGQVKDLPDDLRLGYAELVLAIADNDLLGAKQSYKKLGIK TLSNCGADEDREMLRLAQTMFDSKLPHGVEMLQPFSDDSSLKKLSVQAFPEELFSILRTVHLLRGLSVGLGLNYSCAEQWRPIAEEALYGAGRLKGELSE TSMPPSTFQAFVRALLTLHLTVALSSRWRPENSSSKTWILAEIISQEYMNLANNMYSARRSQSCVQRMDIVMDMTPPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24810			Protein kinase superfamily pro...		Lus10043122 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Lus10014469 [exp]	2.8	0.9160
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10032652 [exp]	3.7	0.9017
AT5G03420			5'-AMP-activated protein kinas...		Lus10023003 [exp]	4.0	0.9198
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	5.1	0.9248
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	5.9	0.9100
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	6.0	0.9022
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	7.9	0.9194
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	13.1	0.8807
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	15.3	0.9113
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	17.0	0.9083

Compare expression of checked genes

Lus10043122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.