Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50530 599 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 599 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 573 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT3G52950 476 / 3e-163 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 446 / 1e-151 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT1G47271 41 / 0.0007 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032625 [exp] 896 / 0 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10025698 [exp] 445 / 3e-151 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10035965 [exp] 431 / 1e-145 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10019117 [exp] 42 / 0.0005 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099600 [exp] 709 / 0 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 664 / 0 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.005G070500 [exp] 494 / 2e-170 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.007G098400 [exp] 490 / 7e-169 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.005G228300 [exp] 45 / 6e-05 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 44 / 0.0001 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 42 / 0.0007 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10043123 pacid=23168006 polypeptide=Lus10043123 locus=Lus10043123.g ID=Lus10043123.BGIv1.0 annot-version=v1.0 ATGGCGAGTCAAGGCGGCTCTTCTAGGAAAAGTCTGACCTTCTCTAGCGCCCCTGTCAACGGGCGGAGGAAATCAATCGCTGACAACGGAGCCGCTGGCG ATCCTTCCCGAAAAGCATCAGTCATTTCTCGTCCTGTGGGTTTAACCGGAGAGCGTACTGTTAAACGGTTGCGCTTGTCAAAGGCTTTAACAGTACCTGA AACTACAAGTATATATGATGCCTGCCGAAGAATGGCTGCTCGAAGACTTGATGCCTTGTTGCTGACCGACTCCAATGCATTACTCTGTGGAATACTTACA GACAAGGACATAGCAACAAGGGTCATCGCTCGTGAAGTTAATCTCGAGGAAACTCCCGTTTCGAAAGTTATGACGAGGAATCCAGTTTTTGTTCTCTCTG ATACTCTGGCTGTTGAAGCTTTACAGAAAATGGTGCAAGGAAAATTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTTGTCGCCTTGTTGGATATAGC GAAGTGTTTATATGATGCAATAGCTCGTATGGAAAGAGCAGCTGAAAAGGGGAAAGCAATTGCTGCAGCTGTTGAAGGTGTTGAGAAAAATTGGGGTGCA TCGCTTTCTGGACAAAGTTCGTTCATTGAGGCACTTCGGGAGCAGATGTTCAAGCCTTCATTATTGACAATAGTTCCGGAGAATTCAAAGGTCGTGACAG TTTCACCAACTGAGACAGTTTTGGCAGCAACGAAAAAGATGCTTGAATCTCGGGCTAGCTGTGTTGTGGTGATAGTCGATGATAAACCATGTGGAATATT AACCTCAAAAGACATCTTGATGCGCGTGATAGCACAAAATCTTGCCCCAGATTCCACGTTTGTTGAAAAGGTCATGACTCCAAATCCCGCGTGTGGTACG ACTGATACACCTATTGTTGATGCTTTGCATACCATGCATGATGGGAAGTTTTTGCATCTGCCTGTGGTGGATAAGGATGGTGTTGTAGTTGCCGTTGTAG ATGTGATTCACATAACTCATGCTGCAGTGACCACAGTTGGAAATGCTGGTGGAGTAAATACCGAGGCCACAAGCACAATGATGCAAAAGTTCTGGGATTC CGCGATGGCACTAAGTCCTTGCGATGATGATGAAGACATTCATAGCGAGGGGTCCTTAAAATTGAATTCTGAAGGAACAGAAACAGGGAGGTCCCTTCCC TATCCTTCATCGTCAGTTCCAAACACATTTTCCTTCAAGATTGAAGATAAAAGGGGGAGGATGCACAGATTTACATGTGACACTAGAAGTTTGACAGATC TGATAACATCGATTCTTCAGAGGATTGGTACTGATATCGACCGCAATAACTTGCCTCAGATTTTGTATGAAGATGAGGACCATGACAAAGTTGTTGTGGA GTCTGACAATGACCTATCGACCGCTGTAGAGCACGCACGGGCAGCTGGTTTAAAGGGGTTGAGATTGCATTTAGACTATTCGGGGGATCGTGGTCATCGG AGAGGGAGAGGGATGCAAGAATCTAGTTCAGGAAGTTTAGAGTATAGTCAAAAAGATGCATGGGCAGCTGCGTATAGTGCAGTTGCAGCTGGTGCTGCTT TGGTTGCTGGCTTAGGATTCTTTGCATACCTGAAGAGATCTGGCAGCTGA
AA sequence Show only first row Show all	>Lus10043123 pacid=23168006 polypeptide=Lus10043123 locus=Lus10043123.g ID=Lus10043123.BGIv1.0 annot-version=v1.0 MASQGGSSRKSLTFSSAPVNGRRKSIADNGAAGDPSRKASVISRPVGLTGERTVKRLRLSKALTVPETTSIYDACRRMAARRLDALLLTDSNALLCGILT DKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVVALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGA SLSGQSSFIEALREQMFKPSLLTIVPENSKVVTVSPTETVLAATKKMLESRASCVVVIVDDKPCGILTSKDILMRVIAQNLAPDSTFVEKVMTPNPACGT TDTPIVDALHTMHDGKFLHLPVVDKDGVVVAVVDVIHITHAAVTTVGNAGGVNTEATSTMMQKFWDSAMALSPCDDDEDIHSEGSLKLNSEGTETGRSLP YPSSSVPNTFSFKIEDKRGRMHRFTCDTRSLTDLITSILQRIGTDIDRNNLPQILYEDEDHDKVVVESDNDLSTAVEHARAAGLKGLRLHLDYSGDRGHR RGRGMQESSSGSLEYSQKDAWAAAYSAVAAGAALVAGLGFFAYLKRSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	0	1
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	1.4	0.9515
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	3.5	0.9400
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	5.1	0.8891
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	5.5	0.9311
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	6.3	0.9197
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	13.1	0.8847
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	13.9	0.8992
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	14.5	0.9013
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	16.2	0.8966
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	16.9	0.9036

Compare expression of checked genes

Lus10043123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.