Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33410 294 / 5e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 293 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 246 / 7e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 244 / 4e-76 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 233 / 5e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 221 / 1e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 187 / 3e-55 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 177 / 3e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 172 / 2e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 167 / 6e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032624 [exp] 526 / 0 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011783 [exp] 333 / 5e-111 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022889 [exp] 303 / 1e-99 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023740 [exp] 287 / 1e-93 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 288 / 2e-93 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 244 / 2e-75 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 243 / 5e-75 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 238 / 1e-72 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 236 / 4e-72 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170400 [exp] 370 / 9e-125 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 362 / 9e-122 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 302 / 9e-99 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 295 / 5e-96 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 240 / 5e-74 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 239 / 7e-74 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 237 / 7e-73 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 234 / 6e-72 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 230 / 3e-70 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 228 / 1e-69 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043124 pacid=23167956 polypeptide=Lus10043124 locus=Lus10043124.g ID=Lus10043124.BGIv1.0 annot-version=v1.0 ATGGATTCCGATCAGGGGAAGCTTTTCGTCGGCGGGATTTCCTGGGAGACGACGGAGGACAAGCTCACTGAACACTTCGGACAATACGGAGATGTTCTGC AGACCGCTGTAATGCGGGACAAAACCACTGGCAGGCCCAGGGGTTTTGGGTTCGTCGTCTTTGCAGATCCTACTGTTCTCGATGCCGTTCTTCAGGATAC CCACACCATTGATGGTCGAACGGTCGAGGCAAAGAGGGCATTATCAAGAGAGGAGCAACAAAGCAATCCTAGACCCGGGAATTCTAATTATGCTAGAAGC TCTGGTGGTGGTGGTAGCAGCGGCGTTAGGACGAAGAAGATTTTTGTTGGTGGGTTACCTCCCTCGGTGACAGAAGATGTATTCCGCCAATATTTTGAAG CTTATGGCCAGGTTACCGACGTAGTAATAATGTATGACCAAACCACACAACATCCCCGTGGATTTGGATTTGTTTCCTTCGATTCTGAGGATTCAGTTGA TAGGGTGTTGCACAAAACTTTTCATGACTTAAGCGGCAAGCAAGTTGAAGTGAAGCGGGCTCTTCCTAAAGATGCAAATCCCGGTGGAGGCAGTCGCTCC TCCATGGGTGGTGGTAACGCTGGTGGTGGTGGGGGTTATCAAAGCTATGGTGGAAATTCAAGCTCATATGATGGTAGAATGGATTCAAATAGGTACATGC AGCCCCAAACTGCTGGAGGAGGTAGCTTTCCTCCTTACGGGGCATCGGGCTACAATACAACACCTGGATATGGAGGCTATGGTGCTGGAAGTTATGGAGG TTATGGTAGTGCTGGGTATGGGGCAAATGGAGGTGCACCTTATGGAAACCCTAATGTCCAGAATGCCGGATATAGTAGTGGTCCACCTAGAACTTCATGG AATGATCAGTCTCCGGGTTATGGTGCTATGGGCTATGGAGGTTCTACACCAACAAGTCAAACACAAAGTGGACCTGGTGGTTATAATCAAGGTTACGGTT ATGGTAGTTATGCATCAAATGATGGATCTTATGGTAATCCAGCTGGGTATGGAGGACGTTCTGGCGGTACTCCTGGAGAAGTACAAGGGAATAGTGCAGG CTATGGTGGAGGTGGTTATGGTGATGCAAGTGTGAATGGAGGAGGTCATGCTAATGCAGCATGGAGATCTGAGTCTTCACAAGGTTCTGGGAATTACGCA TCTCAAGGCAATGGTGCTCAGACTAGTCAAGTTGCGTATGGTGGTGGTTATGGAAGTGCTCCGGTTCTCCTGGAGAAGTACAAGGGGACAGTGCAGGCTA TGGTGGAGGTGGTTATGGTGATGCAAATGTGA
AA sequence Show only first row Show all	>Lus10043124 pacid=23167956 polypeptide=Lus10043124 locus=Lus10043124.g ID=Lus10043124.BGIv1.0 annot-version=v1.0 MDSDQGKLFVGGISWETTEDKLTEHFGQYGDVLQTAVMRDKTTGRPRGFGFVVFADPTVLDAVLQDTHTIDGRTVEAKRALSREEQQSNPRPGNSNYARS SGGGGSSGVRTKKIFVGGLPPSVTEDVFRQYFEAYGQVTDVVIMYDQTTQHPRGFGFVSFDSEDSVDRVLHKTFHDLSGKQVEVKRALPKDANPGGGSRS SMGGGNAGGGGGYQSYGGNSSSYDGRMDSNRYMQPQTAGGGSFPPYGASGYNTTPGYGGYGAGSYGGYGSAGYGANGGAPYGNPNVQNAGYSSGPPRTSW NDQSPGYGAMGYGGSTPTSQTQSGPGGYNQGYGYGSYASNDGSYGNPAGYGGRSGGTPGEVQGNSAGYGGGGYGDASVNGGGHANAAWRSESSQGSGNYA SQGNGAQTSQVAYGGGYGSAPVLLEKYKGTVQAMVEVVMVMQM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	0	1
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	1.0	0.9402
AT5G25500			unknown protein		Lus10002031 [exp]	2.0	0.9215
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	2.2	0.8950
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	2.4	0.9066
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	2.6	0.8713
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	2.8	0.8987
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	4.0	0.8701
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	4.9	0.8618
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	5.5	0.8724
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	6.9	0.8532

Compare expression of checked genes

Lus10043124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.