Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46740 337 / 3e-104 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 328 / 2e-101 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 265 / 3e-76 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 188 / 1e-50 UBP25 ubiquitin-specific protease 25 (.1) AT4G31670 185 / 1e-49 UBP18 ubiquitin-specific protease 18 (.1) AT5G65450 181 / 1e-47 UBP17 ubiquitin-specific protease 17 (.1) AT2G24640 169 / 4e-45 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G24560 170 / 2e-43 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 167 / 2e-42 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G10790 119 / 5e-28 UBP22 ubiquitin-specific protease 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032623 [exp] 1257 / 0 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 647 / 0 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10017529 [exp] 281 / 6e-88 AT5G46740 218 / 5e-65 ubiquitin-specific protease 21 (.1) Lus10035825 [exp] 236 / 1e-65 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 235 / 2e-65 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10020116 [exp] 192 / 6e-52 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 192 / 6e-52 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 184 / 7e-48 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 175 / 5e-46 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092400 [exp] 466 / 8e-153 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 454 / 5e-148 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G107500 [exp] 248 / 7e-70 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 246 / 2e-69 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 198 / 2e-53 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 189 / 7e-51 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 170 / 1e-43 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 170 / 2e-43 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.011G112800 [exp] 167 / 2e-43 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.002G104800 [exp] 167 / 1e-42 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10043126 pacid=23168368 polypeptide=Lus10043126 locus=Lus10043126.g ID=Lus10043126.BGIv1.0 annot-version=v1.0 ATGTCGATCAAGGATTGTTACTCCCCCACCTCCGGCGGCGGCGGTCGCGGCGGTGGAGCAGTTCTCGACACCGATTCTGGCCCGTCCTGTCCCCTGACTG AAGCCCTAGATGCAGTAGAGTTGCTGGAGCTGTCAGATCCACCTGAAGATTACGGAACCTCAGTCGGGAACTCTGATTTCGTCTCTGCGCAAACCCTAGC TGGTTCGGAATCTGAATATCCTCGGAACCTGCAGCATCCCCGAGTTGAGGAGGGTGTTCCGGGGGGTTCTTATGGTGTTGCCCTCGTGGATTTCCACTCT GCTTTTACTTCGTCAGAGGCTAAACCTTCGGAATGTGAAGCCGGTTCAGGTGAAGCATTGAACGGTCAACCTCTGGAAACAAGGATGGATGACTGCGTGG ACGACAAAGATACTCCTGGTTCTCCTCCTGTACCAGAAAATGGAGACAGCGCACTTTCCTCACCCGAAGGTAATCCCTATGATGAAGAGCCTTTTAGCGA TGATGATGGAGGGAGATGGGATAGGAGGATGTTTCGTAGTTTTGGTCCCCGCTATCATCGCCCTATTCACTATCTCCCATGGCATACCCATCGATGGAGC CCAAAATATGATCAAGAGGATGATGAAGACAAGCCTAGCAGTTTTATCTATCCCCCGCGGAGAACTTTTCCCACTGGCATGGGTGCTGGACTGTTCAATC TCGGTAACACGTGCTTCATTAATGCGATATTGCAATGCTTTACCCACACGGTGCCTCTCGTCAAAGCTTTGCGATCTCACAGTCATTCATTGCCGTGTGA GCGAGGAATAGATGGGTTTTGTGTACTTGATGCACTTCGAGATCTCATAGAACGTTCTTTGTCTTCTTCTGGGAAGATTATTGCTCCTCAAAACCTCTTT GATAACTTGAGTTGCATTTCATCCTTTTTCTGTAGATACCAGCAGGAAGATGCACATGAATTCTTACAGTGCTTGTTGGATAGGCTTGAGAGATGTTGTT TAGAACCAAATCCAGCTGATGATAACTCATCTTCTGATGCCAATAACATTGTGCAACAGATTTTTGGAGGTCGTCTTGTGAGCAAACTGAAGTGCTGCTC CTGTGGCCACTTCTCTGACAAATATGAGCCCTTAATTGACTTGAGTCTGGAGATTGAAGAAGTGGACAACCTCCATGACGCCTTTGAGTCTTTCACCAAA GTGGAGAAGATAGAGGATCCAGAAGCAAAGTTGACTTGTGATGGTTGCAAAGAGAAAGTATCCATGGAGAAGCAGTTTATGTTGGACAGGGCTCCTCAAA TTGCTACTTTGCATTTAAAGAGATTCAAGAGTGATGGATACTCTGTTGATAAGATTGGCAAACATGTTGAGTTTCCTCTGGAGTTGGATTTAACGCCCTA CTCCAACCACGAGGAGGATGGTAATGGGAATCTGAAATATCAATTGTATGGAGTTGTGGTGCACAACGGTTGGTCGCCTACCTCTGGGCATTACTTTTGC TATATAAGGTCCTCGCCTGGAAAATGGCACAAGTTGGATGATACAAAGGTAATTGAATGTCGAGAAGAATATGTGCTATCTCAATCTGCATACATTCTCT TGTACGCCAGAGACGGCATGCCATGGTTTTCAACTTTGATGGAGTCACAAAAATTGAATGACGATTTGACTAGTTCATGCGCGTCTCCAAAATCTGTTCT ACAGACAGTGGAAGGGGATAATGGCATAGTTCCAGATGCTGCTGATGAAGTAACAGAGCCCCAAGCCAATTCCCTTGACGAATCATCGGATGAGCATATT GAGATTCACGATCTTGCGCAAGGACCAAGCTTTTGTGTTGACGATGTGGAACCTCTGATAGTTATTGATCATCCACGTGACACAAGAAGAGAGTCTCCGG ATGCTACGTTGAACGAGGAAAAATCGTCTCCGGATGCTAGGTTGAACGAGGAAAAATCGTCTCCTCCTGCAAGTAGCAATCACAAGAAGTGTTGTAACAC TGGTGGAAACGATGAACCTCTCCCACAGGCACCTTCAGGCCCTTGTGCGAATTATGCTAGGAAGCCAGAAAGTATATATCGAGCAAGTAAAGAGCAGCAG CAGGTGAAGGTTGGAATGGCTGTAGGTAAGCAGCAGCAGCAGCAGCAGCAAGGAACACAGAAGAGAGCGTTGGATCCTCAGAAAAGGGCAGCCATCCGGT ATATAAACAAGAGGATGCCATCTTCAAAAAGGGCGGCCCAGTTAATGTCGTCATTAAATGATGCCACGAATGAGAAGAAAGAAGGGTTGGGTTCGTCGAC GTGCAAGAGATCCAGGTCCCCTGATCCCTACCGAAGATTTGTGCGGCCTACTGAATTTACCCGATGA
AA sequence Show only first row Show all	>Lus10043126 pacid=23168368 polypeptide=Lus10043126 locus=Lus10043126.g ID=Lus10043126.BGIv1.0 annot-version=v1.0 MSIKDCYSPTSGGGGRGGGAVLDTDSGPSCPLTEALDAVELLELSDPPEDYGTSVGNSDFVSAQTLAGSESEYPRNLQHPRVEEGVPGGSYGVALVDFHS AFTSSEAKPSECEAGSGEALNGQPLETRMDDCVDDKDTPGSPPVPENGDSALSSPEGNPYDEEPFSDDDGGRWDRRMFRSFGPRYHRPIHYLPWHTHRWS PKYDQEDDEDKPSSFIYPPRRTFPTGMGAGLFNLGNTCFINAILQCFTHTVPLVKALRSHSHSLPCERGIDGFCVLDALRDLIERSLSSSGKIIAPQNLF DNLSCISSFFCRYQQEDAHEFLQCLLDRLERCCLEPNPADDNSSSDANNIVQQIFGGRLVSKLKCCSCGHFSDKYEPLIDLSLEIEEVDNLHDAFESFTK VEKIEDPEAKLTCDGCKEKVSMEKQFMLDRAPQIATLHLKRFKSDGYSVDKIGKHVEFPLELDLTPYSNHEEDGNGNLKYQLYGVVVHNGWSPTSGHYFC YIRSSPGKWHKLDDTKVIECREEYVLSQSAYILLYARDGMPWFSTLMESQKLNDDLTSSCASPKSVLQTVEGDNGIVPDAADEVTEPQANSLDESSDEHI EIHDLAQGPSFCVDDVEPLIVIDHPRDTRRESPDATLNEEKSSPDARLNEEKSSPPASSNHKKCCNTGGNDEPLPQAPSGPCANYARKPESIYRASKEQQ QVKVGMAVGKQQQQQQQGTQKRALDPQKRAAIRYINKRMPSSKRAAQLMSSLNDATNEKKEGLGSSTCKRSRSPDPYRRFVRPTEFTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	1.0	0.9765
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	2.4	0.9653
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	4.0	0.9513
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	4.6	0.9550
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	5.7	0.9305
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	6.5	0.9646
AT2G37960			unknown protein		Lus10021116 [exp]	6.9	0.9590
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	7.2	0.9597
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10011250 [exp]	8.5	0.9370
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10022775 [exp]	8.5	0.9503

Compare expression of checked genes

Lus10043126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.