Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17895 330 / 1e-103 UBP20 ubiquitin-specific protease 20 (.1) AT5G46740 330 / 3e-103 UBP21 ubiquitin-specific protease 21 (.1) AT5G57990 260 / 6e-76 UBP23 ubiquitin-specific protease 23 (.1) AT4G31670 183 / 1e-49 UBP18 ubiquitin-specific protease 18 (.1) AT3G14400 183 / 2e-49 UBP25 ubiquitin-specific protease 25 (.1) AT5G65450 180 / 4e-48 UBP17 ubiquitin-specific protease 17 (.1) AT2G24640 167 / 1e-44 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 169 / 5e-44 UBP15 ubiquitin-specific protease 15 (.1.2) AT4G24560 167 / 2e-43 UBP16 ubiquitin-specific protease 16 (.1) AT2G22310 119 / 6e-29 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032623 [exp] 754 / 0 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 648 / 0 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10017529 [exp] 283 / 7e-90 AT5G46740 218 / 5e-65 ubiquitin-specific protease 21 (.1) Lus10035825 [exp] 239 / 4e-68 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 239 / 5e-68 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10026918 [exp] 189 / 1e-51 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 189 / 3e-51 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 179 / 6e-47 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 173 / 5e-46 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092400 [exp] 459 / 6e-152 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 444 / 1e-145 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G107500 [exp] 244 / 6e-70 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 243 / 4e-69 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 190 / 1e-51 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 186 / 2e-50 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 172 / 6e-45 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 169 / 1e-43 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 168 / 2e-43 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.011G112800 [exp] 166 / 2e-43 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10043127 pacid=23168092 polypeptide=Lus10043127 locus=Lus10043127.g ID=Lus10043127.BGIv1.0 annot-version=v1.0 ATGGGCTTCGACATGATCATCAGATCCCATGATGGCGAGCTAATTCAATATCGTACCTTTGTAAAGAATGGTGTAATGCCTGTAAGAGAAGGTGAAGCTA CAGCTTTGCTTGAAGGACTTCGATGGGTGTCAAGTCTTGGCTACCAGCGGGTAATATTTGAACGGGACTCTCAAGTACTAGCACGTGCAGTTGTAGACCC GATTGATGATGATTCAAAGTTCGGGATCCTCACCAATAGGGAGGGGGGCATAGAGGGTCATCGTTTTCTTCATCTAATACGTCATCCTCCTCTCTCCCAG CCTATGCTACATCTTCATAATCGGAATCAGCAACATACCAATCGTCATTTCACTCGACGGCAAACGACACGACTGCGCACGCCGCCCGATCTATCAGCTG CCGGAGGCCCTCGATTCCGACTTCAAACACCGGCGGCGGTCGGCCTCGATCTCATTCAGTCTGCCTCGATTCTGCCGATCCGACTCGACCTCACCGTCCT CAGTTTCAAGTTTGAATCTTCCCTTCTTCCTCATCAATTCATTATGTCGGGTAATAGAAATCATCATTTACCTTCTCGTGGACGTACACGTGGTCGAGGT CGGCGAAACAGGGGCAGAGGTCGTGGAGTAGTCAGAATTGCTACATCATCTCCGACTCCTTCATTGTGTTCTCATGGTGCTGGACTGTTCAATTTCGGAA ACACATGCTTCCTTAATGCGATATTGCAATGCTTTACACACACTGTGCCTCTCGTCAAGGCTTTACGATCTCACAGTCATTCATTGCCGTGCGAGCGAGG CATAGATGGGTTTTGTGTACTTGATGCACTCCGAGATCTCATAGAACGTTCTTTGGCTTCTTCTGGGAAGATTATTGCTCCTCAAAACCTTTTTGACAAC TTGAGTTGCATTTCATCCTTTTTCCGAAGATACCAGCAGGAAGATGCACATGAATTCTTACAGTGCTTGTTGGATAGGCTTGAGAGATGTTGTTTAGAAC CAAATCCAGCTGAAGATTCCTCATCTTCTGATGCCAATAACATTGTGAAGCAGATTTTTGGAGGTCGTCTTGTGAGCAAACTGAAGTGCTGCTCCTGTGG CCACTTCTCTGACAAATATGAGCCCTTAATTGACTTGAGTTTGGAGATTGAAGAAGTGGGCAACCTCCATGACGCCTTTGAGTCTTTCACGAAAGTGGAG AGGATGGAGGATTCAGAAGCAAAGTTAACTTGTGATGGTTGCAAAGAGAAAGTATCCATGGAGAAGCAGCTTATGCTGGACAGAGCTCCTCTTATTGCTA CTTTGCATTTAAAGAGATTCAAGAGTGATGGATACTCTGTTGATAAGATTGGCAAACATGTTGAGTTCCCTCTGCAGTTGGATCTAACGCCCTACTCCAA CCATGACGAGGATAGTAATGTGAGTTTGAAGTATCAATTGTATGGAGTTGTGGTGCACAACGGATGGTTGCCTACCTCTGGGCATTACTTTTGCTATATA AGGTCCTCGCCTGGAAAATGGCACAAGTTGGATGATACAAAGATATATGATTATCGAGAAGAATATGTATTATCTCAATCTGCATACATCCTCTTTTACG CAAGAGACGGCACCCCATGGTTCTCAAGTTTGATGGAATCACAAAAGTTCAACGAAGATCTGGGCAGTTTAAACACGTCGCCAAAATCTGTTCTACAAAC AGTGGAAGGAGATGATGGTATAGTTGCAGATGCTGCTGATGAAGTAATGGAGCCCGGGTCCTCAAAAAAGGGAGCCATGGATCCTGGAAAAATGGAAGCA ATCAGGTATATAAACAAGAGGATGCCATCTTCAAGACAGGACCAGTTACTGTCGTCATTAAATGATACCTCCTCGAATGAGAAGAAAGAAGGGTTGAGTT CTTCCTCAAGGTGCAAGAGATCCAGGTCCCCTACTACTGACTCGTGTTTTGTTTGGTGGCAACAGTAA
AA sequence Show only first row Show all	>Lus10043127 pacid=23168092 polypeptide=Lus10043127 locus=Lus10043127.g ID=Lus10043127.BGIv1.0 annot-version=v1.0 MGFDMIIRSHDGELIQYRTFVKNGVMPVREGEATALLEGLRWVSSLGYQRVIFERDSQVLARAVVDPIDDDSKFGILTNREGGIEGHRFLHLIRHPPLSQ PMLHLHNRNQQHTNRHFTRRQTTRLRTPPDLSAAGGPRFRLQTPAAVGLDLIQSASILPIRLDLTVLSFKFESSLLPHQFIMSGNRNHHLPSRGRTRGRG RRNRGRGRGVVRIATSSPTPSLCSHGAGLFNFGNTCFLNAILQCFTHTVPLVKALRSHSHSLPCERGIDGFCVLDALRDLIERSLASSGKIIAPQNLFDN LSCISSFFRRYQQEDAHEFLQCLLDRLERCCLEPNPAEDSSSSDANNIVKQIFGGRLVSKLKCCSCGHFSDKYEPLIDLSLEIEEVGNLHDAFESFTKVE RMEDSEAKLTCDGCKEKVSMEKQLMLDRAPLIATLHLKRFKSDGYSVDKIGKHVEFPLQLDLTPYSNHDEDSNVSLKYQLYGVVVHNGWLPTSGHYFCYI RSSPGKWHKLDDTKIYDYREEYVLSQSAYILFYARDGTPWFSSLMESQKFNEDLGSLNTSPKSVLQTVEGDDGIVADAADEVMEPGSSKKGAMDPGKMEA IRYINKRMPSSRQDQLLSSLNDTSSNEKKEGLSSSSRCKRSRSPTTDSCFVWWQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043127 [exp]	0	1
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	4.5	0.7863
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	11.3	0.7341
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	22.1	0.7257
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	22.6	0.7286
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	30.6	0.7094
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	36.6	0.7241
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	41.8	0.6993
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	42.7	0.7211
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	46.7	0.7235
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	50.7	0.6892

Compare expression of checked genes

Lus10043127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.