Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 505 / 1e-167 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 484 / 1e-159 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G13620 437 / 2e-141 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08140 405 / 4e-129 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28180 404 / 2e-128 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08150 400 / 3e-127 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 399 / 3e-127 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G28170 387 / 2e-122 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT3G44910 371 / 1e-116 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT3G44920 370 / 3e-116 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032622 [exp] 477 / 1e-163 AT3G44900 176 / 2e-49 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 465 / 2e-152 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 452 / 2e-147 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 415 / 2e-132 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016153 [exp] 412 / 5e-132 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10035312 [exp] 408 / 2e-129 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10021412 [exp] 387 / 1e-122 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016152 [exp] 382 / 5e-121 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 375 / 1e-117 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176400 [exp] 472 / 3e-155 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 465 / 1e-152 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G105200 [exp] 422 / 2e-135 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176800 [exp] 384 / 9e-123 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 387 / 5e-122 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098600 [exp] 373 / 2e-117 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.016G127800 [exp] 362 / 5e-113 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.010G183000 [exp] 362 / 6e-113 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 347 / 1e-107 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 341 / 4e-105 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10043128 pacid=23168143 polypeptide=Lus10043128 locus=Lus10043128.g ID=Lus10043128.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTATTGGAGACAAATACTACTACGACTAGTACTAATTCATGTGTCCAAATCTCACGTTACATTGATTTTGCTGGTATATGGGGCCAGCAAA CATCTGCAGATGATCTTCTCACACATCCATTGCCAACCCTCCAGCTTCAAATTCTTCTTTTCTTCTTCTTCGCCCAGGCCATTCATCTCCTCCTCCTCAA GCACCTCCGTCTCCCCGACATCGTCTCCCAACTCCTTGTGGGGATCCTCCTAGGGCCATCATTTATAGGCAGCAACACCAACTTCAAAGAGGCGCTATTC AAGATCGAAAGCCAAGAAGTGCTAGGCGTGGTTGCCGCACTCGGATACCTCCTCTTCATCTTCACAATCGCTGTCAAAATAGACGTCAAAATGGTGCTTA AAACCGGGCATCGAGCCACCTTGATCGGCATCCTTTCCGTCCTCGCTCCTTTGGTTTTCGGGCTATTCGTCCAAGACATCATCGAAAAGATTCTCAAACT CGAAAACATCGGAGACAACATCCCCTTCATAGTAATGATAATCTCCATCACCCCGTTCCCGGTCATTGCCAAAACTCTAGGTGATCTCCAAATTCTCAAC TCCGAGCTTGGTCGCCTCACGCTCTCCGCAGCCCTGGTGGGTGACATGGGGAGCGTGGCACTGACGTCCGTGGTGACCATGATTTCGACCAACGTCCATG TTTCCTTTGTCGGCCAGTTCGGGTTCTTTCTCTACACTGTCATATTCATTTGCTTCGCGGCCTTCGTGTTTAGGCCGGTCATGTTCTGGGTGATCGACCA GACTCCAAAAGGAGGTCAGGTTGAAGAGAAGTACATATGTTTGATAATGGTGTGCGTGTTTGGTTCCGGTGTTGTCACGCATTTGTTCGGACAATACGCG TTCTTCGGTCCGTTCATCCTAGGATTGGCCATACCGGAAGGGCCTCCCCTGGCAACTGCTCTAACTGAGAGACTCGACTGCATATCGTCGTATGTACTCC AGCCGGTTTTCGTGGCCATTGCCGGGATGAGGACCGATTTCGGGAGTTTAAAAGGGCAAAGAAAGCTTATCGTCATCGATGTTCTGCTTATCTTTGCAAC ATTAGCCGCCAAAATATTATCGTGCTTTGTGGTTTCGGTACAAGGTGGGATGCCGGTCAAGGACTCCCTTGCGTTCTCGCTTCTTATGAGTGCCAAAGGT GTCGTCGAGTTGGCTACCTATAGCTATTTGAGAGATACCGGGATGATCAGCGGAACGACATTCACAGTGTTAAACATGAGCATTCTACTCACCACAATCG TCGTCCCGGTCATGGTTAGGCGACTCCATGATTCATCGAGGAAATATGCCAACTACCAGAGGAGGAACGTCTCGTTTCTGAGACCTAATTCGGAGCTGCG GATGCTTATAAACATCCACAGCCCTGATACGATACCAGAGATGATCAATTTTATCGAAGCTGTTTCCCCCAAACAGGAGAAGCCGGTTTCTCTCTACGTT CTTCATCTCATCAAATTGACCGGCAGAGCATTGCCCGTCTTTATCTCCCACAAAATCCAAACCAAATTATGCAATTCGTTTTCCTACTACGACAACGTCG CCGCGTTGTTCGAACGCTACAGGCAGCAGATCCAACCGGAGGAAGAAGGCGGAGGCGGCGGCGGATTAACGATCTCAGCCTTCCCCGCCATCTCCCCGCC GGAATCGATGCACGAGGATATCTGCACATTGGCGTTGGACAAGAGAACTTCGCTCATAATCCTCCCGTTCCATCAAACCAGATCCTCGAAGGGGCGGGTT TTGACTGACGACAAAATCCTAAGAGCTCTTAATCGGAGCGTTCTCGACAGAGCTCCTTGCTCCGTCGGCATCCTCGTCGACCGCCGGCGCGTGATCAAAC AAACACAAAAACTACCGTCGGATCACCAGACTGTAGCTGTTGTTTTCATCGGAGGAGACGATGACAGGGAGGCACTGACGTTGGCGAAACGGATGGTCCG AGGAGGGTCATCCTCTACCGTTAAGTTAACGGTGATCCGGTTGGTGGCTAAGGACGGTGACGGCGGGTTGACGGAGTGGGAGAAGATTCTGGATTTCGAG GCGTTGAAGGACATCATCAAGGGGAAGCGTGGTGAAAACAACGACGTCGGCGGCGATGAGATGTTGAATATTGAAGGTTGTTACGTGGAGGAGGCGGTGA AAGACGGGCAGGAGACGTCGCGGGTGATGAAGAGAGTGGCGACCGGTTATGAGCTCATAATCGTGGGCAGAAGAAACGGCGTGGTGTCGCCGCAGACGAA GGGGCTGTCGGAGTGGAGTGTGTTCCCTGAATTGGGATTGATCGGAGACTTGCTTGCATCTCGCGATCTCAATTGTAAAGCTTCCATTCTAGTTGTGCAA CAACAACTACAAATGAAATAG
AA sequence Show only first row Show all	>Lus10043128 pacid=23168143 polypeptide=Lus10043128 locus=Lus10043128.g ID=Lus10043128.BGIv1.0 annot-version=v1.0 MAAVLETNTTTTSTNSCVQISRYIDFAGIWGQQTSADDLLTHPLPTLQLQILLFFFFAQAIHLLLLKHLRLPDIVSQLLVGILLGPSFIGSNTNFKEALF KIESQEVLGVVAALGYLLFIFTIAVKIDVKMVLKTGHRATLIGILSVLAPLVFGLFVQDIIEKILKLENIGDNIPFIVMIISITPFPVIAKTLGDLQILN SELGRLTLSAALVGDMGSVALTSVVTMISTNVHVSFVGQFGFFLYTVIFICFAAFVFRPVMFWVIDQTPKGGQVEEKYICLIMVCVFGSGVVTHLFGQYA FFGPFILGLAIPEGPPLATALTERLDCISSYVLQPVFVAIAGMRTDFGSLKGQRKLIVIDVLLIFATLAAKILSCFVVSVQGGMPVKDSLAFSLLMSAKG VVELATYSYLRDTGMISGTTFTVLNMSILLTTIVVPVMVRRLHDSSRKYANYQRRNVSFLRPNSELRMLINIHSPDTIPEMINFIEAVSPKQEKPVSLYV LHLIKLTGRALPVFISHKIQTKLCNSFSYYDNVAALFERYRQQIQPEEEGGGGGGLTISAFPAISPPESMHEDICTLALDKRTSLIILPFHQTRSSKGRV LTDDKILRALNRSVLDRAPCSVGILVDRRRVIKQTQKLPSDHQTVAVVFIGGDDDREALTLAKRMVRGGSSSTVKLTVIRLVAKDGDGGLTEWEKILDFE ALKDIIKGKRGENNDVGGDEMLNIEGCYVEEAVKDGQETSRVMKRVATGYELIIVGRRNGVVSPQTKGLSEWSVFPELGLIGDLLASRDLNCKASILVVQ QQLQMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10043128 [exp]	0	1
AT1G18060			unknown protein		Lus10041995 [exp]	12.2	0.8101
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	13.4	0.7715
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	19.1	0.7861
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	22.2	0.7754
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	26.6	0.7782
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	34.9	0.7592
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008740 [exp]	49.1	0.7603
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	51.8	0.7642
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	55.6	0.7539
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	58.2	0.7537

Compare expression of checked genes

Lus10043128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.