Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13430 845 / 0 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1) AT4G26970 86 / 2e-17 ACO2 aconitase 2 (.1) AT2G05710 83 / 2e-16 ACO3 aconitase 3 (.1) AT4G35830 75 / 5e-14 ACO1 aconitase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032620 [exp] 954 / 0 AT4G13430 772 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10014463 [exp] 786 / 0 AT4G13430 702 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10021533 [exp] 91 / 8e-19 AT2G05710 1523 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 91 / 9e-19 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 89 / 3e-18 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 89 / 4e-18 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 87 / 1e-17 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 86 / 2e-17 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10041858 [exp] 74 / 2e-13 AT4G35830 1695 / 0.0 aconitase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065100 [exp] 900 / 0 AT4G13430 850 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.008G172500 [exp] 707 / 0 AT4G13430 644 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.014G153400 [exp] 88 / 4e-18 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 82 / 5e-16 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 77 / 1e-14 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.005G108100 [exp] 77 / 2e-14 AT4G35830 1668 / 0.0 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10043129 pacid=23168100 polypeptide=Lus10043129 locus=Lus10043129.g ID=Lus10043129.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCACCTTCACCTCTCCTTCCACATCCTTCATCTCCAACAAGAATGAACTGGCTCGCTCAGCTCTCTCCCCGATACCGTCTCCTTTCTCGG TTCCCAAATCCAGGAAATCAATCTCGAATAAGATCGTTTCAGTTATGGCGCCACAGCAGTCACAGCGCAGTCCCGCTACTACTGGTTCCGTGAAGACTGC GATGACGATGACTGAGAAAATCTTGGCTAGGGCTTCACAGAAGCCGCAGTTGAGCCCTGGTGAAAATGTTTGGGTGGACATTGATATCTTGATGACTCAT GATGTTTGTGGTCCTGGTTCCATTGGTATCTTCAAGAAAGAGTTTGGGCAGAGTGCTAAGGTTTGGGACCGTGAAAAGATTGTCATCATACCTGATCACT ATATATTTACCAATGACGAACGTGCAAATCGTAACGTGGATATTTTGAGAGACTTCTGTGCGGAGCAAGACATTAAGTACTTCTATGACATTCAGGACCG GGGTAATTTTAAGGCTAACCCTGATTACAAAGGTGTGTGTCATGTGGCACTTGCACAAGAGGGTCACTGCAGACCTGGCGAGGTCTTGCTAGGTACAGAC TCACACACCTGTACAGCTGGAGCTTTTGGCCAATTTGCCACTGGAATCGGTAACACTGATGCAGGTTTTGTATTAGGCACTGGGAAGCTCTTGCTTAAGG TTCCCCCAACGTTGCGATTTGTAATGGATGGTGAAATGCCCGATTATATACTTGCAAAGGATCTGATTTTGCAAATTATTGGTGAAATATCTGTGGCTGG TGCAACATATAAATCAATGGAGTTTGTTGGCACAACTGTTGAAAGTTTAAATATGGAAGAGCGTATGACCTTATGTAACATGGTTGTTGAAGCTGGAGGA AAGAATGGTGTTGTGCCAGCTGACAGTACTACTTTCAAGTATCTTGAGGATAAGACATCTCTTCCGTATGAGCCTGTTTACAGTGACCAGCACGCAAGGT ATCTTTCGGAGTATAGATTCGACATCTCAAAGTTGGAACCAATAGTTGCCAAGCCCCATTCTCCTGATAACCGAGCTTTGGCAAGAGAGTGCAAAGATGT CAAGATTGACAGGGTCTATATTGGATCTTGTACTGGTGGGAAAACTGAGGATTTCATGGCTGCAGCCAAAGTTTTCCTAGCTTCAGGATACAAAAAGGTC AAGGTACCCACCTTCCTTGTGCCTGCTACACAGAAGGTGTGGATGGACGTTTACAGTCTCCCTGTACCCGGAGCTGGTGGTAAGACATGCTCTCAAATTT TCGAGGAAGTCGGTTGCGACACACCTGCAAGTCCGAGTTGTGGTGCTTGTTTGGGAGGCCCTAAAGATACTTATGCACGCATGAACGAACCAAAGGCAAG TGGATGCTTTCTACTCCCTTATTTCCCTTCAGAATTGAGTATCATAACAGTCTGTGTCTCGACGACAAATCGGAACTTCCCAGGAAGGATGGGGCACAGA GAAGGAGAGATATACCTTGCTTCTCCTTATACAGCAGCAGCTTCTGCTTTGACTGGCTATGTCACTGATCCCAGGGAGTTCTTGCAGTAG
AA sequence Show only first row Show all	>Lus10043129 pacid=23168100 polypeptide=Lus10043129 locus=Lus10043129.g ID=Lus10043129.BGIv1.0 annot-version=v1.0 MASSTFTSPSTSFISNKNELARSALSPIPSPFSVPKSRKSISNKIVSVMAPQQSQRSPATTGSVKTAMTMTEKILARASQKPQLSPGENVWVDIDILMTH DVCGPGSIGIFKKEFGQSAKVWDREKIVIIPDHYIFTNDERANRNVDILRDFCAEQDIKYFYDIQDRGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTD SHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYILAKDLILQIIGEISVAGATYKSMEFVGTTVESLNMEERMTLCNMVVEAGG KNGVVPADSTTFKYLEDKTSLPYEPVYSDQHARYLSEYRFDISKLEPIVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGYKKV KVPTFLVPATQKVWMDVYSLPVPGAGGKTCSQIFEEVGCDTPASPSCGACLGGPKDTYARMNEPKASGCFLLPYFPSELSIITVCVSTTNRNFPGRMGHR EGEIYLASPYTAAASALTGYVTDPREFLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10043129 [exp]	0	1
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	2.8	0.8610
AT4G13150			unknown protein		Lus10038175 [exp]	5.5	0.8431
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	12.2	0.8324
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	15.0	0.8294
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	19.0	0.7934
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	23.1	0.7802
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	23.4	0.7734
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	25.7	0.7860
					Lus10022956 [exp]	26.8	0.7047
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	30.8	0.8165

Compare expression of checked genes

Lus10043129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.