Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15000 248 / 6e-78 cobalt ion binding (.1) AT3G06790 168 / 3e-49 plastid developmental protein DAG, putative (.1.2) AT1G72530 135 / 1e-37 plastid developmental protein DAG, putative (.1.2) AT2G33430 129 / 6e-35 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 129 / 2e-34 plastid developmental protein DAG, putative (.1) AT1G11430 126 / 1e-33 plastid developmental protein DAG, putative (.1) AT1G32580 125 / 4e-33 plastid developmental protein DAG, putative (.1) AT1G53260 113 / 8e-29 unknown protein AT4G20020 99 / 3e-22 unknown protein AT5G44780 86 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032618 [exp] 427 / 6e-148 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10014696 [exp] 369 / 4e-125 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10032619 [exp] 299 / 1e-99 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10016825 [exp] 169 / 3e-49 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10023744 [exp] 127 / 8e-34 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 125 / 4e-33 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 122 / 5e-32 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 119 / 1e-31 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 92 / 5e-20 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112200 [exp] 247 / 2e-77 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 244 / 3e-76 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.010G007200 [exp] 164 / 2e-47 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.011G032900 [exp] 129 / 2e-34 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 129 / 2e-34 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 128 / 5e-34 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 94 / 3e-20 AT4G20020 239 / 2e-74 unknown protein Potri.010G237200 [exp] 61 / 9e-10 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G218800 [exp] 60 / 3e-09 AT4G20020 182 / 8e-51 unknown protein Potri.008G022200 [exp] 58 / 6e-09 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043130 pacid=23167954 polypeptide=Lus10043130 locus=Lus10043130.g ID=Lus10043130.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTAGAATTTCGATGCTTCTCCGGAGGGCAACAACTACTACTCCCGTCTTCCGTTCCCTACGCCCTCTCTACGTGGCCGCCTCCTCCTCCT CTCACTTCACGAATCTATCTTCCCCCTCTACTGCGGGTCGCTGCTTCGCTACCCGTGCGACTTCGTCCTCGCTTAACGATCCTAGCCCTAACTGGTCGAA TAGGCCGCCGAAAGAGACCATCTTGCTTGATGGATGTGATTTTGAGCACTGGCTGGTGGTGGTGGAGAAACCACAGGATGATCGTACCAGGGATGAGATC ATAGATAGTTACATCAAAACCCTTGCTCAGGTTGTCGGCAGTGAGGAGGAAGCGAGGATGAAAATCTATTCGGTCTCAACCCGTCACTACTTTGCATTTG GAGCTCTTGTTTCTGAGGAGCTTTCTTTAAAGTTGAAAGAGTTGCCTAATGTTCGTTGGGTTCTCCCGGACTCATATCTGGATGTGAAGAACAAAGACTA TGGAGGGGAACCATTCATTGATGGGCAAGCTGTTCCGTATGATCCCAAGTATCATGAGGAATGGGTAAGAAATAATGCTAGAGCAAATGAGAGGAACCGA CGCAATGACCGCCCAAGGAACTTCGATCGGTCACGAAATTTCGACCGAAGAAGGGAGAACATGCAAGGTCGGGATTTCCAGAATCCCCAGGCAACTCCAC CTATGGGTAATCCAGCAGTGCAGAATCCTGGATACCAGCAGAACGTGGGCAGCCCAGGTGCGCCACAGCCGCAGCAGCCACAATACCCACCACCTCCACA TAACATCGGAGTGCCAGGTGGGCCACCACAACAATACCCTCAAAGAGGACCAGGAGGACCTCCACCACCACCACCAAACCAACAGATGGGAGGATGGCCA CGGAACAATGATCAAGGATATGCCCAACCTACTCCGCCACCACACAACCAAATGGGCGGAGCTCCAGCAAACATGCATGGAGGAGTCCCACAGGGAAACA ATATGGGAAGGATGCCGCCACCGAATATGGGAGGAGGACCAGCTGGACAGGGTAATCCTGGTTGGTCGAATGGTGGGCATGGGAACTTTCAGAATGGACC ACCCGGTAACATTCAGAATGGACCGCCACCACACAACCAAATGGGCGGATCTCCAGCAAACATGCATGGAGGAGTCCCACAGGGAAACAATATGGGAAGG ATGCCGCCACCGAATATGGGAGGAGGACCAGCTGGACAGGGTAATCCTGGTTGGTCGAATGGTGGGCATGGGAACTTTCAGAATGGACCACCACCTCCAA ATAATGGAGGTGTGCCTTACCAAGGCGAGCAGCCAAGTTATCCGCAGAATGGCTACCCTCAAAACAGGGACGGGAACTTGTCTCGTTACTGA
AA sequence Show only first row Show all	>Lus10043130 pacid=23167954 polypeptide=Lus10043130 locus=Lus10043130.g ID=Lus10043130.BGIv1.0 annot-version=v1.0 MAAARISMLLRRATTTTPVFRSLRPLYVAASSSSHFTNLSSPSTAGRCFATRATSSSLNDPSPNWSNRPPKETILLDGCDFEHWLVVVEKPQDDRTRDEI IDSYIKTLAQVVGSEEEARMKIYSVSTRHYFAFGALVSEELSLKLKELPNVRWVLPDSYLDVKNKDYGGEPFIDGQAVPYDPKYHEEWVRNNARANERNR RNDRPRNFDRSRNFDRRRENMQGRDFQNPQATPPMGNPAVQNPGYQQNVGSPGAPQPQQPQYPPPPHNIGVPGGPPQQYPQRGPGGPPPPPPNQQMGGWP RNNDQGYAQPTPPPHNQMGGAPANMHGGVPQGNNMGRMPPPNMGGGPAGQGNPGWSNGGHGNFQNGPPGNIQNGPPPHNQMGGSPANMHGGVPQGNNMGR MPPPNMGGGPAGQGNPGWSNGGHGNFQNGPPPPNNGGVPYQGEQPSYPQNGYPQNRDGNLSRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	0	1
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	2.6	0.9585
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	7.3	0.9482
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032321 [exp]	7.5	0.9437
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	9.2	0.9226
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	10.2	0.9161
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	10.2	0.9439
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	13.5	0.9208
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10003996 [exp]	15.7	0.9169
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	16.2	0.9361
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	16.4	0.9418

Compare expression of checked genes

Lus10043130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.