Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24190 1135 / 0 Protein kinase superfamily protein (.1) AT3G23940 957 / 0 dehydratase family (.1.2) AT1G79600 358 / 7e-108 Protein kinase superfamily protein (.1) AT1G71810 346 / 7e-104 Protein kinase superfamily protein (.1) AT4G31390 297 / 1e-86 Protein kinase superfamily protein (.1.2) AT5G24970 261 / 1e-73 Protein kinase superfamily protein (.1.2) AT2G39190 246 / 9e-68 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 177 / 8e-46 Protein kinase superfamily protein (.1.2.3) AT5G64940 164 / 2e-41 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 117 / 1e-26 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032616 [exp] 2587 / 0 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10033370 [exp] 1092 / 0 AT3G23940 1013 / 0.0 dehydratase family (.1.2) Lus10034822 [exp] 1091 / 0 AT3G23940 1009 / 0.0 dehydratase family (.1.2) Lus10035701 [exp] 355 / 2e-106 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 331 / 5e-98 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 285 / 1e-81 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 278 / 1e-79 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026952 [exp] 273 / 2e-74 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 246 / 7e-68 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050700 [exp] 1194 / 0 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.003G176600 [exp] 1013 / 0 AT3G23940 1011 / 0.0 dehydratase family (.1.2) Potri.001G051700 [exp] 1002 / 0 AT3G23940 960 / 0.0 dehydratase family (.1.2) Potri.002G061000 [exp] 350 / 9e-105 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 332 / 2e-98 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 298 / 9e-87 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 244 / 3e-67 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 191 / 2e-50 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 172 / 7e-44 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 171 / 2e-43 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00920 [flax] [poplar] ILVD_EDD Dehydratase family CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10043132 pacid=23168040 polypeptide=Lus10043132 locus=Lus10043132.g ID=Lus10043132.BGIv1.0 annot-version=v1.0 ATGGCCGCAACGCCACGCCTCGTCTGTGGCGGAATTGAACACCCCTCCTTCGTCTCACTCGCTAATTACTCCGGAGCATCGGTCACAATTCCCCCCCGGA GGCGACTTAACCGCGTTTTCGCCGTCGCCACTGATCCTAAGCCGACGCAAACCGGAGCTACCAAATCGTCCCTGAGTTCGATTAATGGCTCTGCGACTCC TCCACCGTCTATTACTCCTGTCAACGGAGCTTCTCCCAAGACTGCGCCGAAAAAGCCGGTCAATGGAGCTTCCACTAGGATGGGGGACGTTTCGCAGGAG ATTAAAAGAGTAAGAGCGCAAATGGAAGAGAATGAACAGCTTGCAATCCTCATGCAAGGACTTCGAGGTCAGAATTTAAGGGATGATCAGTTTGCTGATG ATAACATTGAGCTTCGCTTGGTTGAGGTTGATGAAAGCAGTGAGTTTCTTCCCGTGGTATATGATCCTGCCACCATTTCTGCTTACTGGGGAAAACGGCC CCGTGCTGTCACCACACGAATCGTTCAGTTGCTCTCCGTCGCTGGAGGTTTTCTTTCGCGCATTGCTTGGGATGTGATCAACAAGAAGGTCAACGAGAAT CAAGTGGCTAGAGCTATCGAACTTAGAGAAATTGTGACATCCTTGGGCCCGGCATATATTAAACTTGGACAAGCATTGAGTATTCGTCCAGATATACTCT CACCTGTTGCAATGATCGAGCTGCAAAAGCTTTGTGACAAGGTTCCTTCATTTCCCGATGATATTGCAATGGCTCTTCTAGAGGAAGAGCTTGGTCAACC ATGGCAGAATATCTATTCTGAACTCTCTCCTTCTCCAATTGCTGCTGCCTCTTTAGGACAAGTATATAAGGGTCGTCTAAAAGAAACTGGTGAACTTGTA GCTGTTAAAGTTCAGAGGCCATTTGTCCTTGAGACTGTGACAGTTGACCTCTTTGTCATAAGAAACCTGGGTTTGTTCCTCCGAAAATTTCCTCAGGTTG TTGTGCCAAAAACCTACGAGAAATATACGACAAGAAAGGTTCTCACTACACAGTGGATTGAAGGAGAGAAACTGTCCCAAAGCACTGAGAGCGATGTTGG TGATTTAGTAAATGTTGGAGTCATATGCTATTTGAAGCAGTTGCTTGATACTGGATTTTTCCATGCCGATCCACATCCTGGCAATCTGATCCGCACTCCC GATGGGAAATTGGCTATACTCGACTTTGGTCTAGTGACAAAATTGACTGATGACCAGAAATATGGGATGATCGAAGCAATTGCCCACCTTATACATAGAG ACTATGATGCAATTGTCAAAGATTTTGTCAAACTGGGCTTTATCCCTGAAGGGGTCAATTTGGCGCCCATCTTACCTGTTCTGGCTAAGGTGTTTGATCA GGCACTTGAAGGTGGTGGTGCCAAGAATTTCAACTTTCAGGAGTTAGCAGCGGATCTTGCACAAATAACCTTTGATTATCCATTTAGGATACCTCCTTAT TTTGCCCTTATAATAAGGGCGATCGGAGTTTTGGAAGGCATAGCTCTGGTGGGAAATTCTGATTTTGCGCTTGTTGATGAGGCATACCCGTACATTGCAC AGAGGCTCCTCACCGATGAATCACCTCGCCTGAAGAGTGCTTTGCGTTACATGATTTACGGGAAATCTGGTGTATTTGACGCTGAAAGATTCATTGATGT CATGCAAGCCTTTGAGTCTTTCATCACTGCAGCTAAAAGTGGAGGGGGAGAGGATATGAATGGGGGTATGGCAGAACTAGGCATCTTGAAAAGCGAAAGC ATCTCCACAAGCTCGTTCTTGACTGCATTCCCACCAACAGCGACCCAAGCTGCTGAGCCAGTTCAAACAAGGGCAGCATTAACCTTTTTGCTTTCCGAGA AGGGGAACTTCTTCCGAGAATTTCTACTTGACGAGATCGTTAAAGGAATTGATGCAGTGACAAGGGAACAGTTGGTTCAAGTACTGGCACTTGTCGGATT CGGGAACGCTCAGCCCGTGTTTAGCATGGTTCCCAGACCATTTAGACCACCAGCAGCTTTTCTCCCCAGCATAACCGATGAAGACAAAGTCGTCCTGAAC AATGTCCAGAAGGTTATCGAGTTCTTAACTGCCGGGAGCTCCCTCTCGAGCACATCTAATCAGGGTGCCAGTATAGATCGGATTGCGCGGGAGCTTCTAC CTGTTCTACCTGGCATATCGGCCAGGGTGCTCCCTGACATCTTCACAAGGCTCTCTTCTAGGCCTCCATTTCTCCTCCCTTCAGACCGCTCTTGCTTCAC CATGCTATCAACCTTCGTTTCTCCACGCTCCTCGCCATCACTCCCACTCTCGCCGCCTGCCACTCGGCACTGTCGAACTAGCTTCCTCCGCGCCGCAGCT CAGTCACAGCCTGTCGCCGTCGTCTCGCCTCCGCCGGCGGCCGTTTTGACGGAGAAGCTCAATAAATACAGCTCTCAAGTTACATCTCCCAAATCCCAGG GTGGATCCCAGGCTGTATTGTATGGAGTAGGACTGTCGGACGATGACTTGACCAAGCCTCAGGTAGGCATCTCGTCAGTTTGGTATGAAGGCAACACTTG CAATATGCACTTGCTGAAGCTCTCCGAGGCGGTGAAGCAAGGGGTTCAGGAGGCTGGGATGGTTGGATTCAGGTTTAACACTATCGGTGTCAGCGATGCT ATCTCTATGGGGACCAGAGGGATGTGTTACAGCTTGCAGAGTAGGGACTTGATTGCTGATAGTATCGAGACCGTTATGAGTGCTCAGTGGTATGATGCCA ACATCTCCATTCCTGGTTGTGATAAGAATATGCCAGGTACAATTATTGCGATGGGAAGGCTAAACCGGCCTAGTATCATGGTGTATGGTGGATCTATAAA GCCTGGACATGTGAATGGCCATACCTACGATATAGTATCTGCATTTCAGGTCTATGGAGAGTATCTAAGTGGAGCTGTAACTGATGACCATCGGCGAGAA GTTTTACAGAATTCGTGTCCTGGCGCTGGTGCCTGTGGTGGAATGTATACTGCAAATACCATGGCTTCTGCTATTGAAGCCATGGGTATGTCTCTTCCAT ACAGTTCTTCATTACCTGCTGAAAGCGATTTGAAGCTGGATGAATGTCGTTTGGCCGGAAAATACCTTCTAGAGCTGGTTAGGATGGACTTGAAGCCACG AGATATCATCACTCCTACATCATTACGCAATGCAATGGTTACCGTCATGGCACTAGGTGGATCTACCAATGCAGTGTTGCACTTGATTGCTATTGCAAGG TCTGTTGGTTTGAACCTAACACTTGATGACTTCCAGAAGGTTAGTGATGAGATCCCGTTCCTAGCTGATCTCAAACCTAGTGGCAAGTATGTCATGGAGG ATGTTCACAAGATTGGAGGAACACCTGCAGTGCTTCGCTATCTGTTGGAACTAGGTTTCCTTGATGGAGATTCTTTGACTGGCAAGTTGAATATTATTTA TCATGTAGTATTAACCGGGAAGACGTTGGGTGAAAATCTGGCAGAGTGCCCTCCTTTGTCAGAGGGTCAGGAAATTATAAAGCCTGTGGAGAACCCCATC AAGAAGACAGGTCACCTCCAAATATTACGTGGGAATGTTGCACCTGATGGTTCTGTGGCAAAAATTACTGGAAAAGAAGGGCTTTATTTCTCTGGTCCTG CACTTGTGTTTGAGGGAGAGCAATCTATGATGACAGCCATCTCTGAGGATCCAATGAGTTTTAAAGGGAAAGTGGTGATCATTAGAGGAGAGGGACCAAA AGGTGGGCCTGGCATGCCAGAAATGCTAACACCAACAAGTGCAATCATGGGAGCTGGCCTTGGCAAGGATTGTGCATTGTTGACCGACGGGAGATTTTCA GGAGGTTCACACGGATTTGTGGTCGGCCACATTTGCCCTGAAGCACAGGAAGGCGGTCCAATTGGTCTGATTAGAGACGGAGACATAATTACGATTGATG TGAGAGAAAGAAGAATAGATGTTCAGCTTACCGACAAGGAAATGGAACAGAGGAGAAAGAGTTGGACTCCGCCATCATACAAAGCCACTCGTGGGGTGCT CTACAAGTACATCAAGAACGTTCAACCAGCATCAAAAGGCTGTGTCACAGACGAGTAA
AA sequence Show only first row Show all	>Lus10043132 pacid=23168040 polypeptide=Lus10043132 locus=Lus10043132.g ID=Lus10043132.BGIv1.0 annot-version=v1.0 MAATPRLVCGGIEHPSFVSLANYSGASVTIPPRRRLNRVFAVATDPKPTQTGATKSSLSSINGSATPPPSITPVNGASPKTAPKKPVNGASTRMGDVSQE IKRVRAQMEENEQLAILMQGLRGQNLRDDQFADDNIELRLVEVDESSEFLPVVYDPATISAYWGKRPRAVTTRIVQLLSVAGGFLSRIAWDVINKKVNEN QVARAIELREIVTSLGPAYIKLGQALSIRPDILSPVAMIELQKLCDKVPSFPDDIAMALLEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKETGELV AVKVQRPFVLETVTVDLFVIRNLGLFLRKFPQVVVPKTYEKYTTRKVLTTQWIEGEKLSQSTESDVGDLVNVGVICYLKQLLDTGFFHADPHPGNLIRTP DGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYDAIVKDFVKLGFIPEGVNLAPILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPY FALIIRAIGVLEGIALVGNSDFALVDEAYPYIAQRLLTDESPRLKSALRYMIYGKSGVFDAERFIDVMQAFESFITAAKSGGGEDMNGGMAELGILKSES ISTSSFLTAFPPTATQAAEPVQTRAALTFLLSEKGNFFREFLLDEIVKGIDAVTREQLVQVLALVGFGNAQPVFSMVPRPFRPPAAFLPSITDEDKVVLN NVQKVIEFLTAGSSLSSTSNQGASIDRIARELLPVLPGISARVLPDIFTRLSSRPPFLLPSDRSCFTMLSTFVSPRSSPSLPLSPPATRHCRTSFLRAAA QSQPVAVVSPPPAAVLTEKLNKYSSQVTSPKSQGGSQAVLYGVGLSDDDLTKPQVGISSVWYEGNTCNMHLLKLSEAVKQGVQEAGMVGFRFNTIGVSDA ISMGTRGMCYSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIIAMGRLNRPSIMVYGGSIKPGHVNGHTYDIVSAFQVYGEYLSGAVTDDHRRE VLQNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSLPAESDLKLDECRLAGKYLLELVRMDLKPRDIITPTSLRNAMVTVMALGGSTNAVLHLIAIAR SVGLNLTLDDFQKVSDEIPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLELGFLDGDSLTGKLNIIYHVVLTGKTLGENLAECPPLSEGQEIIKPVENPI KKTGHLQILRGNVAPDGSVAKITGKEGLYFSGPALVFEGEQSMMTAISEDPMSFKGKVVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFS GGSHGFVVGHICPEAQEGGPIGLIRDGDIITIDVRERRIDVQLTDKEMEQRRKSWTPPSYKATRGVLYKYIKNVQPASKGCVTDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	0	1
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	3.6	0.8536
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	5.5	0.8520
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	6.9	0.8375
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	9.3	0.8480
AT1G61900			unknown protein		Lus10020048 [exp]	15.5	0.8027
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	16.8	0.8185
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	21.2	0.7843
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	21.8	0.7988
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	21.8	0.8358
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	22.1	0.7721

Compare expression of checked genes

Lus10043132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.