Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04760 290 / 3e-98 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 274 / 7e-91 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04750 268 / 8e-90 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 266 / 6e-89 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT4G15780 224 / 2e-72 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 221 / 7e-71 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33110 199 / 1e-62 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 122 / 4e-33 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT5G22360 118 / 2e-31 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT4G32150 111 / 8e-29 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000754 [exp] 337 / 8e-117 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 296 / 2e-100 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 295 / 3e-100 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 292 / 7e-99 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 289 / 9e-98 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 285 / 2e-96 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 283 / 2e-95 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 275 / 3e-92 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 270 / 3e-90 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 276 / 7e-93 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.015G118300 [exp] 272 / 3e-91 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 267 / 3e-89 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 266 / 4e-89 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 263 / 8e-88 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.010G239900 [exp] 230 / 2e-74 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 226 / 5e-73 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.008G209100 [exp] 212 / 1e-67 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.018G025800 [exp] 114 / 7e-30 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.009G018900 [exp] 113 / 1e-29 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10043133 pacid=23168358 polypeptide=Lus10043133 locus=Lus10043133.g ID=Lus10043133.BGIv1.0 annot-version=v1.0 ATGATTAACAAGTACCTTGCACAGTTCCTCCTCCAATCCCTTGATCCTGAACTTGGTCTATTCAAGTTCCCGGACAGTCAGCGCCTGGACGTGCACCGTG TATACGGTCTGCCCTCGCATTCAAGTCTTACCGATGTTGATGTCCAACATTGCGGGCCAAGGGTGCTCAAGCAGTTTGAAAGCTTCACAAGTACGAAGAG CAATAAGCACTGTAAGAAGAAGACGTTGGATACTTCTTCGGAAGACTCCTCATCTCACGAGGCTTCTTCGGAAGAACATAATTACTTTGAAACGATGGCA CGGGCTGGAAAAGAAGCTATTTTGGAGTCAGTGGGTGAAGCGACGATGGCAACTACGACTGGCAAACAAGTTGTGGTGGGCTTGGTGGCTGATTCGAAAA AGCCAAGGCCGGTAGCATACGACATGCAAAAGAGTGGCAAGAAGTTCGTCCTCTCAAAGCGACTTCAACAAGGAGGATATGCTGGCCAACAACAACACTA TAACAAGACTGTGTGTCTGTCTCACTCAATCAACAAATTCACTTATAATTGCGACGGACATACTTTCAATTATCTCGTCGACAATGGCTACACCTTTTGT TTGGTTGCTGTGGAGTCGGCGGGGAGACAGGTTCCTCTTGCATGTCTGGAACGAATAAAGGATGAATTCAACAAGAAATATAAAGGAGGAAAAGCTTCAA CTGCAAAACCTAATGGTCTCAAGAAGGAGTTTGGGCCTAAGTTGAGGGAGCAAATGCAGTATTGCGTCGATCACCCTGAAGAAATTAACAAAATCGCAAA AGTGAAAGCTCAGGTATCTGAAGTTAAAGGCGTCATGATGGAGAACATTGAAAAGGTACTTGATCGTGGCGAGAAGATTGAATTGCTAGTGGACAAAACA GATAATCTCCGCTTACAGGCACAAGACTTCAAGCAACAAGGAACAAAGATAAAAAGAAAGATGTGGTACGAGAACATGAAGATGAAACTGATCGTGTTTG GTATATTTGCAGCATTGGTTCTTCTCATCTGGTTGTCCATTTGCCATGGACTCAAGTGTTTTTAA
AA sequence Show only first row Show all	>Lus10043133 pacid=23168358 polypeptide=Lus10043133 locus=Lus10043133.g ID=Lus10043133.BGIv1.0 annot-version=v1.0 MINKYLAQFLLQSLDPELGLFKFPDSQRLDVHRVYGLPSHSSLTDVDVQHCGPRVLKQFESFTSTKSNKHCKKKTLDTSSEDSSSHEASSEEHNYFETMA RAGKEAILESVGEATMATTTGKQVVVGLVADSKKPRPVAYDMQKSGKKFVLSKRLQQGGYAGQQQHYNKTVCLSHSINKFTYNCDGHTFNYLVDNGYTFC LVAVESAGRQVPLACLERIKDEFNKKYKGGKASTAKPNGLKKEFGPKLREQMQYCVDHPEEINKIAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT DNLRLQAQDFKQQGTKIKRKMWYENMKMKLIVFGIFAALVLLIWLSICHGLKCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10043133 [exp]	0	1
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	10.0	0.8442
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	11.5	0.8228
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	11.6	0.8264
AT1G64355			unknown protein		Lus10001903 [exp]	13.0	0.8377
AT2G14045			unknown protein		Lus10022007 [exp]	16.3	0.7681
AT2G39170			unknown protein		Lus10040608 [exp]	16.9	0.7935
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	18.5	0.7649
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	22.1	0.7708
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	22.8	0.8170
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10030761 [exp]	23.2	0.7671

Compare expression of checked genes

Lus10043133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.