Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13420 666 / 0 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032613 [exp] 832 / 0 AT5G13420 675 / 0.0 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068200 [exp] 729 / 0 AT5G13420 668 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G161900 [exp] 571 / 0 AT5G13420 529 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00923 [flax] [poplar] TAL_FSA Transaldolase/Fructose-6-phosphate aldolase
Representative CDS sequence Show only first row Show all	>Lus10043136 pacid=23168318 polypeptide=Lus10043136 locus=Lus10043136.g ID=Lus10043136.BGIv1.0 annot-version=v1.0 ATGGCTACCATTTCCAAGCTCTCCAATCTCCACCATCCTTCTCTCCTATTCTTCCATCCCAACACTTCCTCTTCCATCTCCACCGTCTCCTTTCTCCCCG CCGCCGCCAACCCATCCTCTTCGCCTTCCCTCCGATTCGCCTCAAAACCCTCAGCCCGCTCTTTCCTTGTTAAGTGCTCTGTTTCCGCTGGGAATAATGG AAGCTCAATCAAGAGAACTACTCTTCACGATCTCTATGAAAGGGAGGGTCAGAGTCCTTGGTATGATAACCTCTGCCGTCCTGTCACGGATCTCATCCCT TTGATTGACAGTGGTGTTCGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAGGCCATCTCATCCTCAAATGCCTACAATGATCAATTCAAGGAACTTG TACAGTCAGGAACTGATATTGAAAAAGCCTATTGGGAACTTGTAATTAAGGATATTCAGGATGCATGCAAACTTTTTGAGCCCATCTATGATCAGACGGA TGGTGCTGATGGCTATGTCTCTGTAGAGGTTTCTCCTAGACTAGCTGATGACACTGAAGGGACGGTTGAGGCTGCGAAATGGCTGCATAAGGTGGTTGAT CGTCCTAATGTATACATCAAGATTCCTGCTACAGCTGCTTGTGTGCCATCGATTAAGGACACCATTTCACTTGGCATCAGCGTGAATGTGACTTTGATCT TCTCCCTGGCTAGATATGAAGCTGTCATCGATGCGTACTTGGATGGTCTCGAGGCATCTGGCTTATCAGACCTTTCTAGAGTGACGAGTGTTGCTTCCTT CTTTGTAAGTAGGGTGGACACCCTCATCGACAAAATGCTGGAGAAGATCGGGACCCCAGAGGCGCTAGATCTCCGTGGAAAGGCTGCAGTAGCTCAAGCA GGACTGGCATACCAACTCTACCAGAAGAAATTCTCTGGATCAAGATGGGAGGCGTTGGTGAAGAAGGGTGCCAAGAAGCAGAGGCTGCTATGGGCATCAA CCAGCGTTAAGAATCCTGCCTATCCCGATACTCTATATGTAGCACCCCTCATTGGACCGGACACGGTATCGACAATGCCTGATCAAGCACTGCAAGCATT TGTTGATCATGGAGCGGTGGGGAGGACGATCGATTCGAATGTGTCGGAGGCGGAAGGAGTATACAGTGCGCTGGAGAAACTGGGGATAGAATGGAGTGAA GTAGGGGATCAGCTGGAGGCAGAAGGAGTTGATTCGTTCAAGAAGAGCTTTGACAGTCTGTTGGATACCCTCCAAGAAAAGGCCAACTCCCTCAAGCTGG TTAGCATGTAA
AA sequence Show only first row Show all	>Lus10043136 pacid=23168318 polypeptide=Lus10043136 locus=Lus10043136.g ID=Lus10043136.BGIv1.0 annot-version=v1.0 MATISKLSNLHHPSLLFFHPNTSSSISTVSFLPAAANPSSSPSLRFASKPSARSFLVKCSVSAGNNGSSIKRTTLHDLYEREGQSPWYDNLCRPVTDLIP LIDSGVRGVTSNPAIFQKAISSSNAYNDQFKELVQSGTDIEKAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLADDTEGTVEAAKWLHKVVD RPNVYIKIPATAACVPSIKDTISLGISVNVTLIFSLARYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQA GLAYQLYQKKFSGSRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVGRTIDSNVSEAEGVYSALEKLGIEWSE VGDQLEAEGVDSFKKSFDSLLDTLQEKANSLKLVSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	0	1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	1.0	0.9516
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	1.7	0.9336
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	2.4	0.9371
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	2.6	0.9119
AT5G01750			Protein of unknown function (D...		Lus10001255 [exp]	5.3	0.8739
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	5.5	0.9226
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	5.7	0.9329
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	6.2	0.8836
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	6.3	0.9033
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	6.6	0.8982

Compare expression of checked genes

Lus10043136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.