Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043138 pacid=23168303 polypeptide=Lus10043138 locus=Lus10043138.g ID=Lus10043138.BGIv1.0 annot-version=v1.0 ATGGATCTTGTCGTGAAATTCTTGGAGCGAACATTCTCGGAACGGTTCTCGAGCAACGCCTTAAAAGCACTATGGGGGAGGATGGGCAACTCCACGTCTC GCATATCTATCATGTACTTGGTACCCTCTTGGATGGAGATTATTATGTGCGTGCCGGCGTCCAATGGTCCTTTCAGGATTTGTCTACTACATCGCTGTCG CTCGCTGGTCTCCGGACTTCGACATCGAAGAACCAATCAAATCAATACTTACGAGGGGATCTCCCTCGCTACTGAAGAGACATGCACTTGTGTGTCAGAG TGGAGAACATTTATGTTTACATGTCGTGAGCCCCTTAGATCTAGGTGGTTACTTACTCGGGACCTCGGTCCACCTGTTTTCTATGTTTTACCATACCTCG GTTGGAAACGGGGTGAGCATTGGGTCAGGTCGATCGCTTAA
AA sequence Show only first row Show all	>Lus10043138 pacid=23168303 polypeptide=Lus10043138 locus=Lus10043138.g ID=Lus10043138.BGIv1.0 annot-version=v1.0 MDLVVKFLERTFSERFSSNALKALWGRMGNSTSRISIMYLVPSWMEIIMCVPASNGPFRICLLHRCRSLVSGLRHRRTNQINTYEGISLATEETCTCVSE WRTFMFTCREPLRSRWLLTRDLGPPVFYVLPYLGWKRGEHWVRSIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043138 [exp]	0	1
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10041782 [exp]	9.3	0.8585
					Lus10011453 [exp]	14.9	0.7986
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	16.3	0.7321
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	24.2	0.7689
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	27.9	0.7686
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	30.5	0.6629
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	31.5	0.7666
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	34.5	0.7666
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	37.2	0.7666
					Lus10005830 [exp]	39.8	0.7666

Compare expression of checked genes

Lus10043138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.