Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32710 143 / 4e-41 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT5G48820 113 / 2e-30 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT3G24810 60 / 7e-11 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT1G49620 56 / 2e-09 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 54 / 1e-08 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT2G23430 46 / 7e-06 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) AT3G50630 44 / 5e-05 ICK2, KRP2 KIP-related protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032611 [exp] 417 / 3e-149 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10011862 [exp] 110 / 6e-29 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10022796 [exp] 78 / 6e-17 AT5G48820 94 / 4e-23 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054000 [exp] 182 / 4e-57 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.001G314000 [exp] 174 / 6e-54 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.002G242100 [exp] 137 / 2e-39 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.004G142100 [exp] 58 / 4e-10 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.009G103600 [exp] 56 / 3e-09 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.007G042300 [exp] 46 / 5e-06 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 43 / 6e-05 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [flax] [poplar] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10043139 pacid=23167968 polypeptide=Lus10043139 locus=Lus10043139.g ID=Lus10043139.BGIv1.0 annot-version=v1.0 ATGGGAAGGTACATGGCCAAGACAAAGAGAACCGGCCACGTCGCCGGCATGGACCTCTCCCTCGGCGGCGTCCGTACCAGAGCCAAAACCCTAGCTCTCC TCCGCCTTGAACAGCAGCAAACCACCCCGAAATTGCATGCCTCTCCTCTCTCTTATCCTCCGCCAGATGCTGCTGCTCCTGCCTCCGCCGGATATCTGCA GCTTCGGAGCCGCCGTCTTGAGAAGCCTCCCGTTGTGTTGTACGGCTCTAACCGGCGACAGTCCAGGCAGGCTGATGATGTTGCTGACCAAGTGGCTGGT GGTGGAAACCCTAACCCTAGCCCTGTTCACGACTCGGATTCTTCTGGGGTTCAGGATCAGAAGTTGGGGAAAGAGACGATTGGTGAAATTAGGCACGCTG AGGAAGTAGTTCAGCAACTTAACGACCAAGGGAAGGACACTAATCAGAATAGGGATTTGGGTTTGGAGGCTTCTTTTGGGGAGAATTGCTTGGAGATTGA GGGCAGAGATAGAAGCACCAGGGAATCCACGCCTTGCAGCCTGATAAGAGACCCGGAAACAATAAGAACGCCTGCTTCCACCACTCGACCTACCTGCTCA ACCAATGCTAGCACTAGAATGCAAAACTCAGCGACCACTCGAATCCCAACAGCAGGGGAAATGGATGAGTTCTTTGCTGGAGCTGAAGAAGAACAAGTGA AACAGTTTATCGACAAGTATAACTTTGACCCCGTTAACGAGAAGCCTCTCCCTCCTGGACGTTATGAATGGGAGAAAATAGATCCTTAG
AA sequence Show only first row Show all	>Lus10043139 pacid=23167968 polypeptide=Lus10043139 locus=Lus10043139.g ID=Lus10043139.BGIv1.0 annot-version=v1.0 MGRYMAKTKRTGHVAGMDLSLGGVRTRAKTLALLRLEQQQTTPKLHASPLSYPPPDAAAPASAGYLQLRSRRLEKPPVVLYGSNRRQSRQADDVADQVAG GGNPNPSPVHDSDSSGVQDQKLGKETIGEIRHAEEVVQQLNDQGKDTNQNRDLGLEASFGENCLEIEGRDRSTRESTPCSLIRDPETIRTPASTTRPTCS TNASTRMQNSATTRIPTAGEMDEFFAGAEEEQVKQFIDKYNFDPVNEKPLPPGRYEWEKIDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10043139 [exp]	0	1
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	15.6	0.8023
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	17.1	0.7813
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	21.4	0.7324
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	22.8	0.7823
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009600 [exp]	23.0	0.7539
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	31.4	0.7593
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	49.6	0.7389
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	61.0	0.7445
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	61.9	0.7261
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	68.2	0.7003

Compare expression of checked genes

Lus10043139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.