Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24010 252 / 7e-85 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G54390 87 / 4e-20 ING2 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) AT5G36740 41 / 0.0006 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 41 / 0.0006 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032609 [exp] 280 / 5e-90 AT1G04610 248 / 7e-75 YUCCA 3 (.1) Lus10033830 [exp] 91 / 2e-21 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10018974 [exp] 58 / 1e-09 AT1G54390 328 / 2e-112 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10018681 [exp] 41 / 0.0005 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174000 [exp] 282 / 2e-96 AT3G24010 281 / 5e-96 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G058800 [exp] 90 / 3e-21 AT1G54390 372 / 4e-131 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.019G033800 [exp] 89 / 1e-20 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.010G087700 [exp] 42 / 0.0003 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 41 / 0.0006 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10043140 pacid=23167976 polypeptide=Lus10043140 locus=Lus10043140.g ID=Lus10043140.BGIv1.0 annot-version=v1.0 ATGATTCTCCGTTATGAAAACCCCAAATTTCCAGATCTTGAGTGTCTGCCCAATATCCTGCAGAAGAAATACGCCTTATTGCGTGATCTTGATAAAAGCT TGCAAGGGATCCAGCGTCAAAATGAACAGCGTTGTGAGCAAGAGATTGAAGACATTAAGTGTAGAATTCAAGCTTCGAATACCTTTCCAGATGCTTCAGC TGTTAGATTCTCCGATGAGGTAATTGATGAGCAAAAGCATAGCATCAGAATTGCTGATGAAAAGGTTGCATTGGCAGTCCAAGCATATGACCTGGTGGAC GCGCACATTCAGCAACTTGATCAATATTTGAAGAAGTTTGATGAAGATCTCCGGCGTGAGAGAGAGAACAACACTGCATCTGGAACAGCTGCTGCAAGCT CTGATACCAATACAAAACCTGGAAAAGGCAGTGAAGGAGGAGGAAGAGGACGTAAAAAAACGCGGTTGGCAGCAGCAACTGAAGCAGCAGCTGCAACCTC ATCCGCCGATCCCTCCACCACTGTGGAACTGGACATACCAGTAGATCCAAATGAACCAACCTACTGTTATTGCAACGAAGTGAGCTACGGGGACATGGTG GCTTGTGATAATCCCGATTGCAAGATAGAGTGGTTCCATTTTGCTTGTGTGAATCTTAAAGAACAGCCGAAGGGCAAGTGGTACTGCCCGGATTGCGCTC CTTTGAGAGGTCGCCGGAAAGCAGCAAGATGA
AA sequence Show only first row Show all	>Lus10043140 pacid=23167976 polypeptide=Lus10043140 locus=Lus10043140.g ID=Lus10043140.BGIv1.0 annot-version=v1.0 MILRYENPKFPDLECLPNILQKKYALLRDLDKSLQGIQRQNEQRCEQEIEDIKCRIQASNTFPDASAVRFSDEVIDEQKHSIRIADEKVALAVQAYDLVD AHIQQLDQYLKKFDEDLRRERENNTASGTAAASSDTNTKPGKGSEGGGRGRKKTRLAAATEAAAATSSADPSTTVELDIPVDPNEPTYCYCNEVSYGDMV ACDNPDCKIEWFHFACVNLKEQPKGKWYCPDCAPLRGRRKAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Lus10043140 [exp]	0	1
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	1.7	0.7172
AT1G11050			Protein kinase superfamily pro...		Lus10028552 [exp]	8.5	0.6363
AT2G02850		ARPN	plantacyanin (.1)		Lus10028640 [exp]	20.0	0.6648
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	29.0	0.6596
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	35.3	0.6551
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	45.0	0.6164
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	45.0	0.6106
AT3G59490			unknown protein		Lus10013685 [exp]	46.5	0.6349
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	69.6	0.5792
AT1G16760			Protein kinase protein with ad...		Lus10033340 [exp]	94.4	0.5733

Compare expression of checked genes

Lus10043140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.