Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10890 81 / 4e-18 unknown protein AT5G13340 70 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032609 [exp] 137 / 2e-37 AT1G04610 248 / 7e-75 YUCCA 3 (.1) Lus10025702 [exp] 74 / 4e-15 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035960 [exp] 72 / 5e-15 AT5G13340 152 / 5e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211000 [exp] 100 / 2e-25 AT1G10890 76 / 8e-16 unknown protein Potri.001G306100 [exp] 92 / 3e-22 ND / Potri.019G001900 [exp] 55 / 6e-09 AT5G13340 94 / 1e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043141 pacid=23168336 polypeptide=Lus10043141 locus=Lus10043141.g ID=Lus10043141.BGIv1.0 annot-version=v1.0 ATGGCTAGGGACTTGTCACGCTCCCCGCCTTTGTACAGCAGACAAAGGCGTTCCCCATCACCTGTGGGGAACAGGTATAGCAGAAGGAGCCGAAGGGACA AAAGCCAATCTCCTAAAAATTCTTCCAACACTCACAGCAGGCAGCAACATGAGGCAGAAATGAAGCTAGTTGAAGAAGAGACGAAAAAACGGGTGGAAGA AGCTATTAGGAGGAAAGTTGAGGAGAGCTTGAGCACCGAGGAGATAAAACAGGATATAAAAAGGCGATTAGATGATGGACGAAGAACACTGATGGATGAA GTGGCTGCTCAACTTGAGAAAGAAATGGAAGCAGCTGTTGTAGAAAGTAAAGAAAAAGAGGAAAGAGCACGGAAAGAGAAGGAAGAGTGGGAGAAGTTGG CAGAAGCTCAGAGAAGGAAGGTGGAAGAAGCTCAAAGAAGAGAAGCAATGGAGCAGATGAAGAAGGAAGAGGAAAGGTACAGGGAACTGGAAGAAATGCA GAGACAGAAGGAGGAAGCAATGAGAAGAAAGAAGCAGCAAGAGGAGGAAGAGCGTTCAAAGCAGATGAAGTTGCTGGGTAAGAACAAGTCTAGGCCCAAG TTGTCCTTCGCTATCGGCCCTAAATAG
AA sequence Show only first row Show all	>Lus10043141 pacid=23168336 polypeptide=Lus10043141 locus=Lus10043141.g ID=Lus10043141.BGIv1.0 annot-version=v1.0 MARDLSRSPPLYSRQRRSPSPVGNRYSRRSRRDKSQSPKNSSNTHSRQQHEAEMKLVEEETKKRVEEAIRRKVEESLSTEEIKQDIKRRLDDGRRTLMDE VAAQLEKEMEAAVVESKEKEERARKEKEEWEKLAEAQRRKVEEAQRREAMEQMKKEEERYRELEEMQRQKEEAMRRKKQQEEEERSKQMKLLGKNKSRPK LSFAIGPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10890			unknown protein		Lus10043141 [exp]	0	1
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	2.0	0.9131
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	5.0	0.8425
					Lus10007667 [exp]	5.9	0.8767
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	6.0	0.8644
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	6.2	0.8959
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	6.5	0.8649
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	7.2	0.8793
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	7.3	0.8900
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	8.0	0.8111
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	8.1	0.8577

Compare expression of checked genes

Lus10043141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.