Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 594 / 0 YUC3 YUCCA 3 (.1) AT2G33230 564 / 0 YUC7 YUCCA 7 (.1) AT1G04180 525 / 0 YUC9 YUCCA 9 (.1) AT4G28720 524 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 523 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT5G25620 438 / 9e-153 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 421 / 3e-146 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 405 / 6e-140 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT4G32540 404 / 1e-139 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G21430 294 / 8e-97 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023695 [exp] 641 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 625 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 534 / 0 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 501 / 1e-177 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 424 / 1e-147 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 422 / 1e-146 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10032608 [exp] 415 / 3e-146 AT1G04610 320 / 9e-109 YUCCA 3 (.1) Lus10023637 [exp] 416 / 2e-144 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 412 / 3e-142 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 615 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 583 / 0 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 565 / 0 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G243400 [exp] 451 / 2e-157 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 442 / 2e-154 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 428 / 7e-149 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 419 / 1e-145 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 413 / 5e-143 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.016G003300 [exp] 292 / 4e-96 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1) Potri.005G186100 [exp] 286 / 8e-94 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10043142 pacid=23168404 polypeptide=Lus10043142 locus=Lus10043142.g ID=Lus10043142.BGIv1.0 annot-version=v1.0 ATGTCCCCACTTTCCATACGGGAAGATTTCTTCTTCCGATCATCCACCCGCCGCCGCAGCATATGGGTCGACGGACCCGTCATAGTCGGCGCCGGACCTT CGGGTCTGGCAAAGAGAACCTACCACCGCCTCAAACTCCACCTCCCTAAGAACTTCTGCCAGCTCCCCAATTTCCCCTTCCCCAGCCATTTCCCAGAATA CCCTTCAAAGTTCCAGTTCATCACCTATCTGGAAGCCTACGCCAGGCATTTCCACATCAGCCCGCAGTTCAACGAGACGGTCCAGTCCGCCAAATACGAC CAGACGTTCGGTCTCTGGCGGATCAAGACCGTCTCCCACGCGGGCCCGTTTGCGGCCGAGCTGGAGTACATATGTCGTTGGATAGTGGTGGCCACCGGGG AGAATGCTGAGAAGGTGGTACCGGAGTTCCAGGGGCTGGATGGTGATTTTGCCGGAGATGTCGCCCATGCATGTGAGTACAAATGCGGCGACAGGTACCG CGGGAAGCGGGTCCTGGTCGTGGGATGTGGCAACTCCGGAATGGAAGTTTCGCTCGATCTCTGTAATTATGATGCCATCCCTACAATGGTCGTCAGAAGC TCGGTTCATGTATTGCCAAGAGAAATAATGGGGAAGTCGACGTTCGAATTGGCGGTAACGTTGATGAAGTGGATGCCGTTGTGGATGGGGGACAAAGTAC TGCTGGGTTTCACGAGGGTGATTTTGGGGAATCAGGAGAAGTACGGTCTGAAAAGGCCACAGATCGGGCCACTGGAGCTGAAGAACATCCAAGGCAAGAC GCCTGTTTTGGACATTGGGGCGTTGGCCAAGATACGATCCGGCCAAGTCAAGGTTGTCCCCGGTATCAACAAGTTCACTAATAATACCAAAGTTGAGCTC GTCAACGGCGAGATTCTGGAGATTGATTCTGTGATTTTGGCAACTGGGTATCGCAGCAATGTTCCTTCTTGGCTAAAGGAGAACGAGTTTTTTTCGGAAG ATGGAGTGCCAAAGGATCCATTCCCAAACGGGTGGAAAGGGAAAGCAGGGCTGTACGCAGTTGGGTTCACAGGGAAAGGGCTATCAGGTGCTTCTCTTGA CGCCATTAGTGTGGCGCTTGACATTGCTAAGAGCTGGAGAGAAGATACTAAACAGAAGAAGAAGACCATGGCTGCCAAGCACAGGAGATGCATCTCTCAT TTCTGA
AA sequence Show only first row Show all	>Lus10043142 pacid=23168404 polypeptide=Lus10043142 locus=Lus10043142.g ID=Lus10043142.BGIv1.0 annot-version=v1.0 MSPLSIREDFFFRSSTRRRSIWVDGPVIVGAGPSGLAKRTYHRLKLHLPKNFCQLPNFPFPSHFPEYPSKFQFITYLEAYARHFHISPQFNETVQSAKYD QTFGLWRIKTVSHAGPFAAELEYICRWIVVATGENAEKVVPEFQGLDGDFAGDVAHACEYKCGDRYRGKRVLVVGCGNSGMEVSLDLCNYDAIPTMVVRS SVHVLPREIMGKSTFELAVTLMKWMPLWMGDKVLLGFTRVILGNQEKYGLKRPQIGPLELKNIQGKTPVLDIGALAKIRSGQVKVVPGINKFTNNTKVEL VNGEILEIDSVILATGYRSNVPSWLKENEFFSEDGVPKDPFPNGWKGKAGLYAVGFTGKGLSGASLDAISVALDIAKSWREDTKQKKKTMAAKHRRCISH F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	0	1
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043144 [exp]	2.4	0.9091
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10016366 [exp]	2.6	0.9082
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	3.3	0.9430
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024369 [exp]	6.4	0.8820
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	12.5	0.8346
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10010940 [exp]	12.6	0.9231
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	14.8	0.8145
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10033592 [exp]	15.2	0.8906
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	16.7	0.9184
AT5G05340			Peroxidase superfamily protein...		Lus10009935 [exp]	19.4	0.8722

Compare expression of checked genes

Lus10043142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.