Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 285 / 5e-96 YUC3 YUCCA 3 (.1) AT2G33230 256 / 9e-85 YUC7 YUCCA 7 (.1) AT5G43890 236 / 5e-77 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 235 / 8e-77 YUC9 YUCCA 9 (.1) AT4G28720 235 / 1e-76 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G25620 196 / 1e-61 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 195 / 2e-61 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 181 / 6e-56 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 173 / 1e-52 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G48910 134 / 6e-38 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043142 [exp] 365 / 4e-128 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10032608 [exp] 335 / 4e-118 AT1G04610 320 / 9e-109 YUCCA 3 (.1) Lus10023695 [exp] 311 / 5e-106 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 298 / 4e-101 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10000494 [exp] 249 / 1e-84 AT4G28720 318 / 2e-108 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 248 / 1e-81 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 223 / 6e-72 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 195 / 3e-61 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 192 / 6e-60 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 302 / 5e-103 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 276 / 1e-91 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 260 / 1e-86 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G243400 [exp] 201 / 2e-63 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 200 / 6e-63 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 198 / 1e-62 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 195 / 4e-61 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 175 / 2e-53 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G186100 [exp] 142 / 3e-41 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 132 / 4e-37 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043144 pacid=23167949 polypeptide=Lus10043144 locus=Lus10043144.g ID=Lus10043144.BGIv1.0 annot-version=v1.0 ATGAAGTGGATGCCGTTGTGGATGGTGGACAAAGTACTGCTGGGTTTCACGAGGGTGATTTTGGGGAATCAGGAGAAGTACGGTCTGAAAAGGCCACAGA TCGGGCCACTGGAGCTGAAGAACATCCAAGGCAAGACGCCTGTTTTGGACATTGGGGCGTTGGCCAAGATACGATCCGGCCAAGTCAAGGTTGTCCCCGG TATCAACAAGTTCACTAATAATACCAAAGTTGAGCTCGTCAACGGCGAGATTCTGGAGATTGATTCTGTGATTTTGGCAACTGGGTATCGCAGCAATGTT CCTTCTTGGCTAAAGGAGAACGAGTTTTTTTCGGAAGATGGAGTGCCAAAGGATCCATTCCCAAACGGGTGGAAAGGGAAAGCAGGGCTGTACGCAGTTG GGTTCACAGGGAAAGGGCTATCAGGTGCTTCTCTTGACGCCATTAGTGTGGCGCTTGACATTGCTAAGAGCTGGAGAGAAGATACTAAACAGAAGAAGAA GACCATGGCTGCCAAGCACAGGAGATGCATCTCTCATTTCTGA
AA sequence Show only first row Show all	>Lus10043144 pacid=23167949 polypeptide=Lus10043144 locus=Lus10043144.g ID=Lus10043144.BGIv1.0 annot-version=v1.0 MKWMPLWMVDKVLLGFTRVILGNQEKYGLKRPQIGPLELKNIQGKTPVLDIGALAKIRSGQVKVVPGINKFTNNTKVELVNGEILEIDSVILATGYRSNV PSWLKENEFFSEDGVPKDPFPNGWKGKAGLYAVGFTGKGLSGASLDAISVALDIAKSWREDTKQKKKTMAAKHRRCISHF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043144 [exp]	0	1
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	2.4	0.9091
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	7.9	0.8880
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	13.7	0.8888
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	24.2	0.8868
AT2G35730			Heavy metal transport/detoxifi...		Lus10000263 [exp]	24.3	0.7754
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	26.0	0.8854
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	27.1	0.8800
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	27.5	0.8861
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	28.6	0.8703
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010139 [exp]	30.4	0.8747

Compare expression of checked genes

Lus10043144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.