Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04620 764 / 0 HCAR 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032607 [exp] 887 / 0 AT1G04620 773 / 0.0 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1) Lus10043143 [exp] 200 / 2e-63 AT1G04620 163 / 6e-50 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062300 [exp] 784 / 0 AT1G04620 775 / 0.0 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04422 [flax] [poplar] FrhB_FdhB_N Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term PF04432 [flax] [poplar] FrhB_FdhB_C Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
Representative CDS sequence Show only first row Show all	>Lus10043145 pacid=23168190 polypeptide=Lus10043145 locus=Lus10043145.g ID=Lus10043145.BGIv1.0 annot-version=v1.0 ATGATTTCTCCCATCTGCAGCAGGCTCTCCGCACCTTTCCATGTCTCCGCCTCTTCTACAGATGACAGTTCCACTTCCAAGAAGAAGAAGCCTGTTAAGC TAAGAGACGATTGGAGGCAACGCACCAAACCCATCCCTCCTGGGGCCACCTACCCCGCCAAAGATCAGTGCAGCCGATGTGGGCTGTGTGATACTTATTA CATAGCTCATGTCAAGAATGCTTGTGCTTTTCTAGGAGATGGCATGTCTAGAGTTGAAGCTTTGGAACCTTCAGTCCATGGAAGAGGCAGAAAGACTGAT TCTTTTGACGAAACCTACCTTGGGGTTTATGAGCAACTACTGTATGCTCGTAAGACTAACCCAGTTGAAGGAGCTCAATGGACTGGGATAGTGACTACTA TCGCCATTGAAATGCTGAAAGCTGGTATGGTTGAGGCTGTTATATGTGTACAAAGTGATCCAGAGGACAGATTTTCTCCAATGCCAGTCTTAGCCAGGAC CCCGGAAGAAGTTTTGGCTGCTAAAGGTGTTAAACCAACCTTATCACCTAACTTGAATACCCTTGCTTTAGTTGAGGCTGCAGGGGTAAAACGTCTTCTC TTCTGTGGTGTGGGCTGCCAAGTGCAAGCACTGAGAAGCGTGGAGCAGTATCTTAATTTGGAGAAGCTCTATGTACTCGGCACTAACTGTGTTGATAATG GAACTCGAGAAGGACTCGATAAGTTCCTAAACGCAGCAAGTGAGGAACCTGAAACTGTCCTTCATTATGAATTCATGCAAGATTACAAGGTCCACCTGAA ACATTTGGATGGTCACATTGAAGAGGTTCCTTACTTTTGCTTGCCAGCAAATGACTTGGTGGATGTTATTGCCCCATCTTGCTATAGCTGTTTCGACTAC ACAAATGGGTTAGCGGATCTAGTGGTTGGGTACATGGGTGTTCCCAAATATTCCCAGATTAGTATGACAAACCATCCACAATATGTTACAGTAAGGAATG AGCGAGGGAAAGAAATGCTGGACTTAGTGAAACACCTTTTGGATGTTACTCCAACAACCAATAGTGGTAACAGAAGACCATTTATGATGGAGACTGTCAA GGCAGATGACAACGCAAAGCTAGGAAAGGGTCCTGCTCAACCTGCTCCAAAGCTTGTTGGAAACCTGATTGCTTTTATACTCAACTTGGTCGGGCCAAAG GGTCTTGAATTTGCTCGGTATTCACTTGACTACCATACGATACGGAACTATTTGTACACGAACCGTATTTGGGGGAAAGAAAGAGCTGCCAGACACACCC CTTCTTATGCGAAGAAACTTGTCGAACTTTACAACCAGAACGGGGAAATCGATCAGATGTTAAAAATGAAGTGA
AA sequence Show only first row Show all	>Lus10043145 pacid=23168190 polypeptide=Lus10043145 locus=Lus10043145.g ID=Lus10043145.BGIv1.0 annot-version=v1.0 MISPICSRLSAPFHVSASSTDDSSTSKKKKPVKLRDDWRQRTKPIPPGATYPAKDQCSRCGLCDTYYIAHVKNACAFLGDGMSRVEALEPSVHGRGRKTD SFDETYLGVYEQLLYARKTNPVEGAQWTGIVTTIAIEMLKAGMVEAVICVQSDPEDRFSPMPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLL FCGVGCQVQALRSVEQYLNLEKLYVLGTNCVDNGTREGLDKFLNAASEEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDY TNGLADLVVGYMGVPKYSQISMTNHPQYVTVRNERGKEMLDLVKHLLDVTPTTNSGNRRPFMMETVKADDNAKLGKGPAQPAPKLVGNLIAFILNLVGPK GLEFARYSLDYHTIRNYLYTNRIWGKERAARHTPSYAKKLVELYNQNGEIDQMLKMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	0	1
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	1.0	0.9506
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	1.4	0.9470
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	2.2	0.9438
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	2.4	0.9468
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	2.8	0.9460
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	3.2	0.9321
AT2G04360			unknown protein		Lus10012308 [exp]	4.9	0.9397
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	5.7	0.9346
AT3G57810			Cysteine proteinases superfami...		Lus10020438 [exp]	8.3	0.9150
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	9.2	0.9360

Compare expression of checked genes

Lus10043145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.