Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22330 423 / 1e-151 ATCES1 Alkaline phytoceramidase (aPHC) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032606 [exp] 523 / 0 AT4G22330 423 / 9e-152 Alkaline phytoceramidase (aPHC) (.1) Lus10032605 [exp] 518 / 0 AT4G22330 420 / 1e-150 Alkaline phytoceramidase (aPHC) (.1) Lus10043147 [exp] 511 / 0 AT4G22330 415 / 9e-149 Alkaline phytoceramidase (aPHC) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057500 [exp] 447 / 2e-161 AT4G22330 418 / 1e-149 Alkaline phytoceramidase (aPHC) (.1) Potri.001G317400 [exp] 437 / 3e-157 AT4G22330 398 / 6e-142 Alkaline phytoceramidase (aPHC) (.1) Potri.004G001300 [exp] 434 / 5e-156 AT4G22330 437 / 3e-157 Alkaline phytoceramidase (aPHC) (.1) Potri.011G023401 [exp] 429 / 2e-154 AT4G22330 454 / 6e-164 Alkaline phytoceramidase (aPHC) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05875 [flax] [poplar] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Lus10043146 pacid=23168255 polypeptide=Lus10043146 locus=Lus10043146.g ID=Lus10043146.BGIv1.0 annot-version=v1.0 ATGGCTGAATCGATATCAAGTTTCTGGGGTCCTGTAACGTCCAACGATTGGTGTGAGGAAAATTACGTCCACTCCTCATACATTGCGGAATTCTTCAACA CCATATCAAATGTCCCTTGTATTGTTTTGGCATTTATCGGCCTTGTGAATGCCTTGAGACAGCGATTTGAAAAGAGGTTTAGCGTGCTCCATATCTCTAA CATGATCCTCGCCATTGGGAGTATGATGTACCATGCCACATTACGACATGTGCAACAACAGGGAGATGAAACTCCAATGGTATGGGAGATGCTATTGTAC TTCTACATCCTCTATTCACCGGATTGGCATTACCGGAGCACAATGCCTACATTTTTGTTCTTCTATGGAGCCGGGTTTGCAGTGATCCACGCATTAATGC GCTTTGGCATGGCGTTCAAGGTGCACTATGCAATCCTGTGTCTCCTCTGCATACCTAGGATGTACAAGTACTATATCTACACAAAGGATGCCGATGCAAA GCGACTTGCGAAATGGTACGTGGCCACCATTTTCCTTGCGACGCTGTGTTGGCTTCCTGACCGCATATTGTGCAGCGAGATCTCAGAGTGGCCGTTGAAT CCGCAAGGGCATGCCTTGTGGCACACCCTGATGGGCTTCAACTCGTACTTCGCCAATGCATTCCTGATGTTTTGCCGTGCAGAGCAGTTAGGGTGGAACC CTAAGGTCGTCCATGCCTTTGGAATATTCCCATACGTGAAGGTTCAGAAGCCAAAAGCACAGTGA
AA sequence Show only first row Show all	>Lus10043146 pacid=23168255 polypeptide=Lus10043146 locus=Lus10043146.g ID=Lus10043146.BGIv1.0 annot-version=v1.0 MAESISSFWGPVTSNDWCEENYVHSSYIAEFFNTISNVPCIVLAFIGLVNALRQRFEKRFSVLHISNMILAIGSMMYHATLRHVQQQGDETPMVWEMLLY FYILYSPDWHYRSTMPTFLFFYGAGFAVIHALMRFGMAFKVHYAILCLLCIPRMYKYYIYTKDADAKRLAKWYVATIFLATLCWLPDRILCSEISEWPLN PQGHALWHTLMGFNSYFANAFLMFCRAEQLGWNPKVVHAFGIFPYVKVQKPKAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043146 [exp]	0	1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	2.4	0.7977
AT1G32260			unknown protein		Lus10035377 [exp]	12.4	0.6377
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	13.2	0.7157
AT5G38790			unknown protein		Lus10034101 [exp]	14.7	0.7708
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	17.7	0.7285
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	18.8	0.7407
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	21.6	0.7137
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	24.6	0.7293
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	29.0	0.7440
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043147 [exp]	29.9	0.7466

Compare expression of checked genes

Lus10043146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.