Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22330 416 / 7e-149 ATCES1 Alkaline phytoceramidase (aPHC) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032606 [exp] 517 / 0 AT4G22330 423 / 9e-152 Alkaline phytoceramidase (aPHC) (.1) Lus10032605 [exp] 516 / 0 AT4G22330 420 / 1e-150 Alkaline phytoceramidase (aPHC) (.1) Lus10043146 [exp] 511 / 0 AT4G22330 422 / 1e-151 Alkaline phytoceramidase (aPHC) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057500 [exp] 436 / 4e-157 AT4G22330 418 / 1e-149 Alkaline phytoceramidase (aPHC) (.1) Potri.001G317400 [exp] 429 / 4e-154 AT4G22330 398 / 6e-142 Alkaline phytoceramidase (aPHC) (.1) Potri.004G001300 [exp] 428 / 1e-153 AT4G22330 437 / 3e-157 Alkaline phytoceramidase (aPHC) (.1) Potri.011G023401 [exp] 419 / 3e-150 AT4G22330 454 / 6e-164 Alkaline phytoceramidase (aPHC) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05875 [flax] [poplar] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Lus10043147 pacid=23168435 polypeptide=Lus10043147 locus=Lus10043147.g ID=Lus10043147.BGIv1.0 annot-version=v1.0 ATGGCTGAAGCGATATCGAGTTTCTGGGGTCCTGTAACGTCCAACGATTGGTGTGAGAAAAATTACGTCCACTCCTCATACATTGCAGAATTCTTTAACA CCATATCGAATATCCCTTGTATTGTTTTGGCATTTATCGGCCTCGTGAATGCCTTGAGACAGCGATTTGAAAAGAGGTTTAGTGTGCTCCATATTTCTAA CATGATCCTCGCTATTGGGAGTATGATGTACCATGCCACGTTACGACATGTGCAACAACAGGGAGATGAAACTCCAATGGTATGGGAGATGCTATTGTAC TTCTACATCCTCTATTCACCGGATTGGCATTACCGGAGCACAATGCCTACATTTTTGTTCTTCTATGGAGCCGGGTTTGCAGTGATCCACGCATTAATGC GCTTTGGCGTGGTGTTCAAGGTGCACTATGCAATCCTATGTCTCCTATGCATACCCAGGGTGTACAAGTACTACATCTACACCAAGGACGTAGATGCAAA ACGGCTTGCGAAATGGTATGTGGCGACCATTTTCCTTGCGATGCTGTGTTGGCTTCCTGACCGTATATTGTGCACCGAGATCTCTGAGTGGCCGATGAAT CCCCAGGGGCACGCCTTGTGGCATGCCTTGATGGGCTTCAACTCGTACTTTGCCAACGCATTCCTGATGTTTTGCCGTGCGGAGCAGTTAGGGTGGAACC CTAAGGTCGTCCGCGTCTTTAGGGTTTTCCCATACGTGAAGGTTCAGAAGCCAAAAGCTCAGTGA
AA sequence Show only first row Show all	>Lus10043147 pacid=23168435 polypeptide=Lus10043147 locus=Lus10043147.g ID=Lus10043147.BGIv1.0 annot-version=v1.0 MAEAISSFWGPVTSNDWCEKNYVHSSYIAEFFNTISNIPCIVLAFIGLVNALRQRFEKRFSVLHISNMILAIGSMMYHATLRHVQQQGDETPMVWEMLLY FYILYSPDWHYRSTMPTFLFFYGAGFAVIHALMRFGVVFKVHYAILCLLCIPRVYKYYIYTKDVDAKRLAKWYVATIFLAMLCWLPDRILCTEISEWPMN PQGHALWHALMGFNSYFANAFLMFCRAEQLGWNPKVVRVFRVFPYVKVQKPKAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043147 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	1.4	0.8592
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	3.5	0.8265
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	6.7	0.8284
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10013049 [exp]	7.7	0.8293
AT5G16950			unknown protein		Lus10021093 [exp]	9.9	0.8544
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	15.5	0.7894
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10022714 [exp]	25.8	0.7545
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	26.6	0.8427
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043146 [exp]	29.9	0.7466
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	31.2	0.7683

Compare expression of checked genes

Lus10043147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.