Plant FIBer expression Database

Lus10043148 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49210 144 / 8e-44 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032604
[exp]
249 / 3e-85 AT5G49210 188 / 7e-61 unknown protein
Lus10036792
[exp]
210 / 9e-70 AT5G49210 174 / 2e-55 unknown protein
Lus10037138
[exp]
202 / 2e-66 AT5G49210 167 / 2e-52 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G317300
[exp]
162 / 8e-51 AT5G49210 93 / 6e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10043148 pacid=23168199 polypeptide=Lus10043148 locus=Lus10043148.g ID=Lus10043148.BGIv1.0 annot-version=v1.0
ATGGCTGCCGCCACCACCGTTCGTGGCGTCGTCCGCGCGACGCGTCGCCTCTTCTCTTCATCCTCCTCCACCTCTGTTGCCACCGGGAAAAACAACCACA
AGGATGGTCATATTTACCTGGATAGCAATTCATTCGTAGGAAGCTGGGAGGCGCCCAAGAATCCGAAGCAGGCTGAGAAGAGACTGGCTCTGTTGCGAAG
ACAGTACGCGAAGCAAGTGAAGGAGGTACGGAAAGAGTATATCGTGGAGATGGAGGCGATCCGAATCGAGAAGCAGAGGAAGGACGAAGCTAGACAAGAG
GCGATCAGGATCGCCAACGAGGAGCGCCGCAAGTTGAAGGCCGAAGCCGCCAAAGTTAGAGCGGAGGAGCGTAAAGTTGCTGACGAGGAGTTCCGCCAAA
CCCTATTAAAAGAGAGAGCAGAGAAGCTCGAGAACTGGAGAATGAAAGAAGCTCAGAGAGTGAAGAAGAAAAAAGATGCAGAGGAGCTGCTGCGCCGGAA
AAGTTCGCTTTGGGTTGATGATCAGAAAGAACTGGAAGCGCAAGTACTCGTAGCCATCTCTTCTTCCTATATACTCTGA
AA sequence
>Lus10043148 pacid=23168199 polypeptide=Lus10043148 locus=Lus10043148.g ID=Lus10043148.BGIv1.0 annot-version=v1.0
MAAATTVRGVVRATRRLFSSSSSTSVATGKNNHKDGHIYLDSNSFVGSWEAPKNPKQAEKRLALLRRQYAKQVKEVRKEYIVEMEAIRIEKQRKDEARQE
AIRIANEERRKLKAEAAKVRAEERKVADEEFRQTLLKERAEKLENWRMKEAQRVKKKKDAEELLRRKSSLWVDDQKELEAQVLVAISSSYIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49210 unknown protein Lus10043148
[exp]
0 1
AT2G25720 unknown protein Lus10032479
[exp]
1.7 0.7887
AT5G65520 Tetratricopeptide repeat (TPR)... Lus10035948
[exp]
6.7 0.7330
AT2G28105 unknown protein Lus10021424
[exp]
7.2 0.7530
AT3G04500 RNA-binding (RRM/RBD/RNP motif... Lus10000555
[exp]
13.0 0.6875
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032561
[exp]
13.1 0.7234
AT2G25720 unknown protein Lus10042976
[exp]
16.1 0.7136
AT1G80230 Rubredoxin-like superfamily pr... Lus10035917
[exp]
19.7 0.6799
AT4G34630 unknown protein Lus10028793
[exp]
20.0 0.7193
AT1G71080 RNA polymerase II transcriptio... Lus10032448
[exp]
23.2 0.6477
AT5G53280 PDV1 plastid division1 (.1) Lus10027574
[exp]
25.8 0.6332

Lus10043148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.