Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25040 294 / 4e-102 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 261 / 6e-89 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) AT4G38790 94 / 3e-23 ER lumen protein retaining receptor family protein (.1) AT1G19970 91 / 5e-22 ER lumen protein retaining receptor family protein (.1) AT3G25160 87 / 2e-20 ER lumen protein retaining receptor family protein (.1) AT2G21190 86 / 5e-20 ER lumen protein retaining receptor family protein (.1) AT1G75760 84 / 1e-19 ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022785 [exp] 305 / 3e-106 AT3G25040 382 / 9e-137 endoplasmic reticulum retention defective 2B (.1) Lus10011846 [exp] 288 / 1e-99 AT3G25040 364 / 7e-130 endoplasmic reticulum retention defective 2B (.1) Lus10029263 [exp] 204 / 9e-66 AT1G29330 337 / 7e-118 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10007314 [exp] 112 / 9e-32 AT1G29330 179 / 2e-58 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 92 / 3e-22 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10003146 [exp] 88 / 8e-21 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 86 / 4e-20 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10022763 [exp] 86 / 4e-20 AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) Lus10038198 [exp] 86 / 4e-20 AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315800 [exp] 317 / 3e-111 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.017G056000 [exp] 316 / 8e-111 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 243 / 9e-82 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 94 / 4e-23 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 94 / 5e-23 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 86 / 6e-20 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.002G246700 [exp] 83 / 5e-19 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10043149 pacid=23167905 polypeptide=Lus10043149 locus=Lus10043149.g ID=Lus10043149.BGIv1.0 annot-version=v1.0 ATGAACATATTCAGGCTGGGTGGGGACATGACCCATTTGGCTAGCGTCCTTGTCCTTCTCCTCAAGATCCACACCATCAAATCATGCGCAGGGGTTTCCC TCAAAACTCAGGAGCTGTATTTCATGGTGTTTGCAACACGTTACTTGGATCTATTCACCCATTTCGTTTCCATATACAACACGGTGATGAAGCTAATATT CCTCGGCAGCGCATTCACCATAATTTGGTACATGAGACGCCATAAATTGGTAAGAAGATCATACGACAAAGACCAAGACACGTCCCCCCACCTTATTCTG GTCCTTGCCTCCATGGCTCTAGCTCTCCTTGTTCACCAAAAACTCACCTTCAAGGAGGTCATGTGGACGTTTTCACTCTACCTGGAAGCCGTCGCCATAC TTCCCCAGCTGGTACTGCTGCAGAAGACCAGAAATATCGACAACTTAACCGGCCAATACGTTCTCCTACTAGGGTCTTACAGAGGGTTGTACTTGTTAAA TTGGACGTATCGCTGGATAACTGGTCGGAGGAGTGTCCATGTCATAACTTGGATGTCAGGGCTTGTTCAAACACTTCTATATGCAGATTTCTTCTACTAT TACATCCAAAGCTGGAGGAAAAACGTCAAGCTGGAGTTGCCTGCCTGA
AA sequence Show only first row Show all	>Lus10043149 pacid=23167905 polypeptide=Lus10043149 locus=Lus10043149.g ID=Lus10043149.BGIv1.0 annot-version=v1.0 MNIFRLGGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYFMVFATRYLDLFTHFVSIYNTVMKLIFLGSAFTIIWYMRRHKLVRRSYDKDQDTSPHLIL VLASMALALLVHQKLTFKEVMWTFSLYLEAVAILPQLVLLQKTRNIDNLTGQYVLLLGSYRGLYLLNWTYRWITGRRSVHVITWMSGLVQTLLYADFFYY YIQSWRKNVKLELPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001671 [exp]	3.7	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	6.2	1.0000
					Lus10002009 [exp]	8.1	1.0000
					Lus10002449 [exp]	8.7	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	9.2	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	10.4	1.0000
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	11.2	0.9976
					Lus10003763 [exp]	11.2	1.0000
					Lus10038209 [exp]	11.3	0.9974
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	13.1	1.0000

Compare expression of checked genes

Lus10043149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.