Plant FIBer expression Database

Lus10043150 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019009
[exp]
78 / 4e-17 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1)
Lus10032600
[exp]
74 / 7e-16 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1)
Lus10039336
[exp]
70 / 4e-14 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1)
Lus10009905
[exp]
47 / 8e-07 AT2G14540 72 / 1e-15 serpin 2 (.1)
Lus10032601
[exp]
45 / 1e-05 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1)
Lus10040926
[exp]
0 / 1 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10043150 pacid=23167994 polypeptide=Lus10043150 locus=Lus10043150.g ID=Lus10043150.BGIv1.0 annot-version=v1.0
ATGCGAGCTTCGATGATTTTAAGGTCCTCGAACTCCCCTATCGATCATCAGACGTTCAAAAGTACCCCCAATTCTCCATGTACATCTTCCTTCTCCGGGA
GCGGGATGGATTTCGGCAACTCGGATTCATTTTTACAAACACTCGATAAGCTTGAGATGGAATATATGGGAAGAGTGCGTATCCCCGAGTGGAAATTCTC
CATCAAGTGCCACCTTAAGGAGACATGCAGAAGTTGGGACTCACATTGCGGTTCGAGTTCGCATGGGATTTCACCAAGATGTTTTGCGAGCGATGGTAAT
AAAATACCGCCGACTGCTGTTTCTGATATATTTCAGAGTGCTTTTATTCAGGTGGATGAGAAAGGTACAGAGGCTGTAGTTGTCAGTACCGGAGCCGGGG
TAAACGCAGGATCCATAACTGGGGTCGGTGCGGGCGATGTTAGCAGTGCCGGAGAAGTCGAAGGAGCCAGCCCCCCGCCCCCCCGAGCGCCCCCCGAGCG
CACGCCCGCGCCTCCACGCTCCCGAGCTTCAGCAGGACCAATATTAGCAAGGAGTTGA
AA sequence
>Lus10043150 pacid=23167994 polypeptide=Lus10043150 locus=Lus10043150.g ID=Lus10043150.BGIv1.0 annot-version=v1.0
MRASMILRSSNSPIDHQTFKSTPNSPCTSSFSGSGMDFGNSDSFLQTLDKLEMEYMGRVRIPEWKFSIKCHLKETCRSWDSHCGSSSHGISPRCFASDGN
KIPPTAVSDIFQSAFIQVDEKGTEAVVVSTGAGVNAGSITGVGAGDVSSAGEVEGASPPPPRAPPERTPAPPRSRASAGPILARS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10043150
[exp]
0 1
AT1G53470 MSL4 mechanosensitive channel of sm... Lus10013692
[exp]
2.2 0.8737
AT4G00370 PHT4;4, ANTR2 anion transporter 2, Major fac... Lus10036366
[exp]
8.9 0.8677
AT3G61700 Plant protein 1589 of unknown ... Lus10004016
[exp]
9.6 0.8486
AT1G74520 ATHVA22A HVA22 homologue A (.1) Lus10024234
[exp]
9.8 0.8504
AT2G41560 ACA4 "autoinhibited Ca\(2+\)-ATPase... Lus10031053
[exp]
11.5 0.8179
AT1G66150 TMK1 transmembrane kinase 1 (.1) Lus10016952
[exp]
14.7 0.8308
AT5G61760 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL ... Lus10020535
[exp]
15.1 0.8417
AT5G45850 Protein of unknown function (D... Lus10015280
[exp]
18.9 0.8407
AT5G58970 ATUCP2 uncoupling protein 2 (.1.2) Lus10016445
[exp]
20.1 0.8227
AT2G46420 Plant protein 1589 of unknown ... Lus10030264
[exp]
20.2 0.8332

Lus10043150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.