Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 1206 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 1191 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 1156 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1009 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G54560 1003 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G17580 994 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT5G20490 991 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G08730 964 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT2G31900 903 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT1G04600 848 / 0 ATXIA, XIA myosin XI A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032597 [exp] 1560 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1311 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 1272 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 1048 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10003315 [exp] 1033 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 1021 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 910 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10011919 [exp] 829 / 0 AT5G43900 978 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10038072 [exp] 736 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174500 [exp] 1390 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.002G254300 [exp] 1298 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.006G145700 [exp] 1045 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 1034 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 1031 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 1026 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 967 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 962 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 803 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 732 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0010 [flax] [poplar] SH3 PF02736 [flax] [poplar] Myosin_N Myosin N-terminal SH3-like domain CL0010 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10043153 pacid=23168039 polypeptide=Lus10043153 locus=Lus10043153.g ID=Lus10043153.BGIv1.0 annot-version=v1.0 ATGGTTGCATCAGTGAATTTCGCGGTGGGATCCTTAGTCTGGCTGGAAGATCCTGACGTGTCTTGGATAGATGGCCAAGTTCTGGAAATTAATGGCGAGG ATCTTAAAGTCCAATGTACAACAGACAAGACAGTTGTTTGTAAAGCATCTAGTGTTTACCCAAAGGATCCGGAGTTCCCATCTTGTGGTGTAGACGACAT GACAAAACTTGCTTATTTGCATGAACCTGGAGTGCTACAGAATCTTAAAGTTAGATACGACATAAATGAGATATATACTTACACAGGAAATATATTGATC GCTGTCAACCCTTTTCGGAGGCTTCCTCATTTGTACGATAATCATATGATGGAGCAATATAAAGGGGCGGCCATCGGGGAGTTGAGTCCCCATCCTTTCG CCGTTGCAGATACAGCATACAGGCAGATGATCAATGATGGAATAAGTCAGTCGATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAGAGTACTAA ATCGCTTATGCGTTATTTGGCTTTTATGGGTGGGAGAAATTCAGATGATGGTGGCCGTTCAGTGGAGCAGCAAGTTTTAGAGTCCAATCCTGTTCTTGAA GCATTTGGTAATGCAAAGACCGTCAGGAATAACAATTCCAGCCGGTTTGGAAAGTTCGTGGAGCTCCAGTTTGACAACAGGGGTAGGATTTCAGGAGCTG CCATCAGAACATATTTGTTGGAGCGTTCTCGTGTTTGTCAAGTGTCTAGTCCCGAAAGAAATTATCACTGCTTTTACATGCTCTGTGCTGCTCCCCCAGA GGACATAAAGAAGTTCAAAGTGGGAGAAGCTAGGTCATTCCATTATCTTAATCAATCAGAGTGCATTAAGTTGGACGGAATAGATGATCCAAAAGAGTAT ATTTTGACTAGAAAAGCCATGGAAGTTGTTGGGATAAGTTCTGAAGAGCAGGATGCAATATTCCGAGTTGTGGCTGCAGTACTACATTTAGGCAACATAG TGTTGGCTAAAGGAAGTGAACCTGACTCTTCTGAACCTAAGGATGATGCTTCTCGCTCCCATCTCAAGACAGCAGCTGAACTTTTCATGTGTGATGAGAA GGGTCTTGAGGACTCCCTATGCAAACGTGTTATTGTAACCCGTGATGACGTCATAACGAAGGTTCTTGATCCTGAAGCTGCCACTATCAATAGAGATGCT TTGGCGAAAATTGTTTATTCAAGGCTATTTGATTGGTTGGTGAACAAGATCAATAACTCTATCGGTCAAGATCCTGATTCAAACAACTTAATCGGGGTCC TGGACATATATGGGTTCGAAAGTTTCAAGACAAACAGATGCTTAGCCGGTACGCTTTTTGAGCAATTCTGTATAAATTTAACAAATGAAAAGTTGCAGCA GCATTTTAATCAGCACGTGTTCAAGATGGAGCAGGAAGAATACACCAAAGAACAGATTAACTGGAGCTATATAGAATTCATTGATAACCAGGACGTTCTT GATCTAATTGAAAAGCGGATGGATGATGACGGCAGCTGTCAGGAGTTTGGGGAGGAGGTGGAGGAGCAGGTGACAAGCGAGCTACATCGTGGGTGTTTAT CTGATTCGTCAGGGCCACACATTATGCATTTCACAATTTCCATCCCTCCCGGTGTGAACAGCGGCAGATTTAGCGGAATGTTAAAGGAAAATCAGCAAGC TCACAAGGAGAAAGTGATTGGCGTGGATGATGATGGTGACCTTGTTCTAACTAGACGTAGCCACTGCCAGGATTGTTCTGGTCAGATTATTAAACTCTCT ATCCAGCATTATATCACATCATCAATACGGGGAGTTGGTTTACAGGTTTGGAAGGCTGAGCTATTGTTGTCCGACTTTGTGCTGCATAAAATGCTTACTT CCTCAGATTTCAATGACATCAGTTCGTTAGTACTTGGAGCTGGAACAGACACTGCTCTTAACAGGAGCAGAATCGTCTCTTGTATGTTTCCTAGATCAAC TAATGACACATTTGCACAGAAGCTTTATCAAACTTTTAAGGATCACAAACGCTTCAGCAAGCCTAAGCTGGCACGTAGTGACTTCACTGTTTGTCATTAC GCTGGGGAAGTAACATATCAAACTGACTTCTTTCTGGATAAAAACAAAGACTATGTAGTTGCTGAACATCAAGCTCTCCTTAGTGCGTCTAAGTGCGCAT TTGTTGCAAGCCTGTTCCCTCCATTACCTGAGGAATCTTCTAAGTCATCCAAGTTTTCATCAATAGGTGCTCAATTTAAGCAACAACTGCAATCTCTGCT GGAAACATTGAATGCCACGGAGCCCCATTATATCCGTTGTGTAAAGCCAAACAATGCTCTAAAGCCAGCAATCTTTGAGAATCCCAATGTCCTACAGCAG CTACGTTGTGGTGGTGTGATGGAAGCGATTAGGATTAGCTGCGCCGGGTATCCCACTAGGAAGATGTTTAATGAGTTCATCGCTCGTTTTGGGATTCTGG CGGCAAATGTTTCAAAGATGAAGTACAGTATTCCTACTTGTTCTCATGGATCTGATGATTGTATTTTTATGGTAGGATCTGATGATGTTTACCTATTCCT TGACAGCTGTGATGAGATTACTGCTTGCAAGAGGATTCTAGAAAAGGTGAAACTTGAAGGTTATCAGGTTGGTAAAACCAAAGTGTTCCTCAGAGCAGGG CAGATGGCAGAACTGGATGCTCGGCGGACTGAAGTATTAGCAAGATCCGCAACCATCATCCAAACCAAAGTTCGGTCATACTATTGTCGCAAAAAATATG TATTGTTGCGACAAGCTGCTATCGAAATTCAAAATGTCTGCAGAGGTGAAAACGCACGACATCGGTTTGAATGTCTCAGAAGAGAAGATGCTTGCGTAAA GATTCAGAAGAATTGTCGCAGGTTTCTGGCCAGGAAAGGTTATAACGGTTTGCAGTCCTCGGCATTGTGCATTCAGGCGGGTATGCGTGGAATGGCTGCT CGCGGCGAGCTCTTATTCAGGAGGAAGCAACAAGCTGCAATTGTGATCCAGAGTCACTGCAGAAAACATTTGGCCAAGCTTGAGTATTTGAGGTTGAAGA GGGCCACAATAGTAATGCAGTGTGCCTGGAGAGGCAGGGTTGCACGTCGAGAACTACGGAAGCTTAGAATGGCTGCTAAGGACACTGGTGCTCTTCAAGA AGCCAAAAGTAAACTAGAAAAGGAAGTGGAAGAACTAACCTGGCGTTTGCAGCTGGAGAAACGGATTAGGGCTGATGTTGAGGAAGCCAAATTACAAGAA ATAACAAAGCTACAAGCTAGTTTAAAAGATTTGCAACTGGAATACCAGGAAACTAAAGAGCAACTTATCAAGGACTGCGAGGCTGCTAAGAAAGAAGCAG AGAAGGTGCCAATAATACAGGAGGTTCCAGTTGTCGACCAAGAATTAGTGAATAAATTCACTGCTGAGAATGAAAGTCTCAAGGCAATGGTAAGTGAATT GGAAAAGAAAATTGACGAGGCAGAGAAGAAGTACGAGGATACCAGTAAGCTTTGTGAAGAAAGGCTGCAGCAGGCTAAAGATGCAGAAGCAAAGATTACA GAGATGAAAGCAACCGTACAGAGTCTTGAAGAGAAGCTCGTGGACATGGAGGCTCATTCAGAATCACTGAGACGGCAAGTGATGTCCAACTCATCTCAGT CTTCTGAAAATGGTCCTGATGGAAATTCAGATAAGCTTGCCAGTGATTCATATGAAAGATTACGAAAATCACAGATCCAAAGGCTACATGAGAACGTTGA TGTTCTAATCACGTGCGTGGAGAAAAATGTTGGATTCTGCGATGGGAAACCAGTTGCAGCAATCACCATATACAGGTGTCTTGTGGAATGGAGATCATTC GAAGCGGAAAAGACAAGCGTTTTTGATCGGCTTATACAAACCATTGGTACTGCATTTGAGAACCAAGATGACAATGAACAGATGGCCTATTGGCTCTCCA ATACTGCTGTGCTGTTGTTCTTACTTCAAAGGACTCTAAAAGGAACTGGTGGAAGTCAAAATCCAGCTCCACCAACATCATTTTTCGGCAGGATGGCTCA AAGTTTTCGGGGGCCTGCTTCGTTTACGGATGTGAAAGTTGGCAAAGATGTCGTACGTATGGTCGAGGCCAAGTACCCAGCATTGCTCTTTAAGCAACAG CTTACCGCATATGTGGAGACAATATATGGCATTATCCGAGACAATTTGAAAAGAGAGTTATCACCGTTGGTATCTGCATGTATCCAGGCTCCGAGGGCGA AGGGGAATGCTCTAAGTGCCTCAGTGAAGTCATTTGGACAAAGTGGTCCAGCTAGTAACTGGCACAGTATTGTGGACAACCTTGAAGCCCTCCTATGTAC AATGAAAGAAAACTTTGTACCCCCGTGTCTTATCCAGAAGGTCTTTGGGCAGCTTTTTGCACATATCAATGTTCAATTGTTTAACAGCCTGCTCCTGCGT CGTGAGTGTTGCACTTTCAGAAATGGAGAGTTCGTTAAATCTGGCTTAGCTGAACTGGAGACATGGTGTGGTCAAGCAAAAGAAGAGTTCATAGGGTCAG CTTGGGATGAACTAAAACACACAAGGCAAGCAGTTGGATTCCTGGTGATACACCAAAAATCCAGGATTTCTTACGATGATATCATGAATGACCTTTGCCC GATTTTGAGCGTTCAACAACTTTACAGAGTGTGTACATTGTACTGGGATGACAACTACAATACTCGAAGCGTGTCCCCAGACGTAATATCCAGCATGAAA ACTTTGGTAACAGACGATTCTAGCAACGACCACTCCTTTCTGTTGGAGGATAGTTCAAGGCTCCCATTCACAGTGGAAGAAGTATGCAATTCATTCCAAG ACAAGGATTTCTCTGAAGTGAAGCCTCCCGACGAGATTGCCGACAACTCCGACTTCCAATTCTTGACCGCCGAATAA
AA sequence Show only first row Show all	>Lus10043153 pacid=23168039 polypeptide=Lus10043153 locus=Lus10043153.g ID=Lus10043153.BGIv1.0 annot-version=v1.0 MVASVNFAVGSLVWLEDPDVSWIDGQVLEINGEDLKVQCTTDKTVVCKASSVYPKDPEFPSCGVDDMTKLAYLHEPGVLQNLKVRYDINEIYTYTGNILI AVNPFRRLPHLYDNHMMEQYKGAAIGELSPHPFAVADTAYRQMINDGISQSILVSGESGAGKTESTKSLMRYLAFMGGRNSDDGGRSVEQQVLESNPVLE AFGNAKTVRNNNSSRFGKFVELQFDNRGRISGAAIRTYLLERSRVCQVSSPERNYHCFYMLCAAPPEDIKKFKVGEARSFHYLNQSECIKLDGIDDPKEY ILTRKAMEVVGISSEEQDAIFRVVAAVLHLGNIVLAKGSEPDSSEPKDDASRSHLKTAAELFMCDEKGLEDSLCKRVIVTRDDVITKVLDPEAATINRDA LAKIVYSRLFDWLVNKINNSIGQDPDSNNLIGVLDIYGFESFKTNRCLAGTLFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFIDNQDVL DLIEKRMDDDGSCQEFGEEVEEQVTSELHRGCLSDSSGPHIMHFTISIPPGVNSGRFSGMLKENQQAHKEKVIGVDDDGDLVLTRRSHCQDCSGQIIKLS IQHYITSSIRGVGLQVWKAELLLSDFVLHKMLTSSDFNDISSLVLGAGTDTALNRSRIVSCMFPRSTNDTFAQKLYQTFKDHKRFSKPKLARSDFTVCHY AGEVTYQTDFFLDKNKDYVVAEHQALLSASKCAFVASLFPPLPEESSKSSKFSSIGAQFKQQLQSLLETLNATEPHYIRCVKPNNALKPAIFENPNVLQQ LRCGGVMEAIRISCAGYPTRKMFNEFIARFGILAANVSKMKYSIPTCSHGSDDCIFMVGSDDVYLFLDSCDEITACKRILEKVKLEGYQVGKTKVFLRAG QMAELDARRTEVLARSATIIQTKVRSYYCRKKYVLLRQAAIEIQNVCRGENARHRFECLRREDACVKIQKNCRRFLARKGYNGLQSSALCIQAGMRGMAA RGELLFRRKQQAAIVIQSHCRKHLAKLEYLRLKRATIVMQCAWRGRVARRELRKLRMAAKDTGALQEAKSKLEKEVEELTWRLQLEKRIRADVEEAKLQE ITKLQASLKDLQLEYQETKEQLIKDCEAAKKEAEKVPIIQEVPVVDQELVNKFTAENESLKAMVSELEKKIDEAEKKYEDTSKLCEERLQQAKDAEAKIT EMKATVQSLEEKLVDMEAHSESLRRQVMSNSSQSSENGPDGNSDKLASDSYERLRKSQIQRLHENVDVLITCVEKNVGFCDGKPVAAITIYRCLVEWRSF EAEKTSVFDRLIQTIGTAFENQDDNEQMAYWLSNTAVLLFLLQRTLKGTGGSQNPAPPTSFFGRMAQSFRGPASFTDVKVGKDVVRMVEAKYPALLFKQQ LTAYVETIYGIIRDNLKRELSPLVSACIQAPRAKGNALSASVKSFGQSGPASNWHSIVDNLEALLCTMKENFVPPCLIQKVFGQLFAHINVQLFNSLLLR RECCTFRNGEFVKSGLAELETWCGQAKEEFIGSAWDELKHTRQAVGFLVIHQKSRISYDDIMNDLCPILSVQQLYRVCTLYWDDNYNTRSVSPDVISSMK TLVTDDSSNDHSFLLEDSSRLPFTVEEVCNSFQDKDFSEVKPPDEIADNSDFQFLTAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	3.7	0.8628
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	4.4	0.8705
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	4.9	0.8246
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	5.5	0.8293
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	6.9	0.7749
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	8.8	0.7791
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	9.4	0.8352
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	14.0	0.8362
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10036905 [exp]	14.3	0.7731
AT3G13620			Amino acid permease family pro...		Lus10010512 [exp]	21.6	0.8463

Compare expression of checked genes

Lus10043153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.