Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13224 320 / 5e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 256 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 199 / 1e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 175 / 1e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 164 / 9e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 161 / 8e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 160 / 9e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G33410 157 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 151 / 7e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 130 / 1e-34 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032595 [exp] 422 / 6e-148 AT3G13224 357 / 2e-122 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032124 [exp] 278 / 1e-90 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014562 [exp] 271 / 3e-88 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 176 / 1e-50 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 173 / 2e-49 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 167 / 1e-47 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 164 / 1e-46 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006396 [exp] 161 / 2e-46 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 163 / 1e-45 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370300 [exp] 365 / 4e-126 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G344900 [exp] 273 / 1e-89 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G196500 [exp] 224 / 8e-70 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 221 / 2e-68 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G064901 [exp] 209 / 3e-67 AT3G13224 216 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G258600 [exp] 178 / 3e-52 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 171 / 4e-49 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G195300 [exp] 169 / 6e-49 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 170 / 1e-48 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 170 / 1e-48 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043154 pacid=23168198 polypeptide=Lus10043154 locus=Lus10043154.g ID=Lus10043154.BGIv1.0 annot-version=v1.0 ATGGCTTCCCGGTCCAGGAAGGATAATCCCCACTCCGGCGACGGCGCTAGCCCAGGGAAGATTTTTATTGGAGGATTAGCCAAAGGTACCAGCTACGAAA CTTTCAACAAACACTTTGGGAAGTATGGGGAGATAACTGACTCCGTCATCATGAAAGATCGTCACACTGGTCAGCCTAGAGGTTTTGGATTCATTACTTA TGCTGATCCTTCAGTTGTTGACAAGGTCATAGAAGACCCACATATCATCAACGAAAAGCAGGTTGAGATAAAGAGGACCATTCCTAAAGGATCTGCGCAT ACTAAAGATTTTAAAACCAAGAAAATATTTGTTGGCGGGATTCCATCATCTGTTACAGAAGATGACTTGCAAGAGTTCTTTTCAAAGTACGGGAAAGTTT TGGAGCATCAAATTATACTGGATCATGAAACCCAACGTCCTCGAGGCTTTGGATTTATCATTTTTGACAGTGAAGAAATAGTAGATGAATTGTTGTCGAA CGGAAACATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCCAGGAAAACCTCAAACCCACCTCCTGCTCCTGCTCCTGCATATGGT ACCAACTCTCGAGGCCGTTCATTCAATGACGGCTTTGGTGGTGGATATGGCAGTCCATATGGGAGTTTTGATGGAGGGTTTGGCCCCGGTCCTTATAGAA CACCTGGGGGTATGGGTAGTAGGCTTGGTGGTGGATATGGGTATGGTAGTGGAGGTCCAGAATATGGAAGTGGTTATGGGAGCTTCGGAGGTAGTAGCCT TGGAGGTGGTTATAGAGGCGAACCCCCACTGGGCTATTCAGGTCGATTCGGACCTTATGGCTCAGGCTATAGTGGAGGTTATGGTGGTAGTGGTTTAGGA GGATATGGTCGAGGGGGCGATGGATATGGCAGTTACGGAGGTCCAGGTGCAGGTTATGGCGATGGTTATGAATCTGGTCCTGGAGCTAGTTTCGGAGGCC CAGGGGGTGGTCTATATGGCCGTGCAGGAGGTTATAGTGGCAGTAGTAGGTACCATCCTTACTCAAGATAG
AA sequence Show only first row Show all	>Lus10043154 pacid=23168198 polypeptide=Lus10043154 locus=Lus10043154.g ID=Lus10043154.BGIv1.0 annot-version=v1.0 MASRSRKDNPHSGDGASPGKIFIGGLAKGTSYETFNKHFGKYGEITDSVIMKDRHTGQPRGFGFITYADPSVVDKVIEDPHIINEKQVEIKRTIPKGSAH TKDFKTKKIFVGGIPSSVTEDDLQEFFSKYGKVLEHQIILDHETQRPRGFGFIIFDSEEIVDELLSNGNMIDMAGTQVEIKKAEPRKTSNPPPAPAPAYG TNSRGRSFNDGFGGGYGSPYGSFDGGFGPGPYRTPGGMGSRLGGGYGYGSGGPEYGSGYGSFGGSSLGGGYRGEPPLGYSGRFGPYGSGYSGGYGGSGLG GYGRGGDGYGSYGGPGAGYGDGYESGPGASFGGPGGGLYGRAGGYSGSSRYHPYSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	0	1
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	1.0	0.9441
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	3.5	0.9383
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	6.2	0.9382
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	6.5	0.9141
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	8.8	0.9185
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	9.8	0.9198
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	12.0	0.9057
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	12.5	0.9038
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	13.1	0.9173
AT1G79150			binding (.1)		Lus10034234 [exp]	13.8	0.9108

Compare expression of checked genes

Lus10043154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.