Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55940 283 / 2e-97 EMB2731 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) AT5G51620 86 / 4e-22 Uncharacterised protein family (UPF0172) (.1), Uncharacterised protein family (UPF0172) (.2), Uncharacterised protein family (UPF0172) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032594 [exp] 341 / 1e-120 AT5G55940 305 / 5e-107 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Lus10016647 [exp] 327 / 8e-115 AT5G55940 311 / 2e-109 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370200 [exp] 294 / 6e-102 AT5G55940 283 / 5e-98 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Potri.001G370000 [exp] 290 / 4e-100 AT5G55940 282 / 1e-97 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF03665 [flax] [poplar] UPF0172 Uncharacterised protein family (UPF0172)
Representative CDS sequence Show only first row Show all	>Lus10043155 pacid=23168331 polypeptide=Lus10043155 locus=Lus10043155.g ID=Lus10043155.BGIv1.0 annot-version=v1.0 ATGTCCGGCGATGACGGTGGTGGCGGGGAGCTCAAGTATGAGATGGCTCAGAACGCTTACATCAAGCTCGTTCTCCACTCCCTCAAACACAAGACATCCG CCGTCAACGGCGTCCTGCTCGGCCGTGCTTCTCCTCTCAACGACAACGTCGTCGAGATCGAAGATTCCGTCCCACTCTTCCACAATCACCTCGGCTTACT TCCTCCCCTCGAGATCTCCCTCATCATGATAGAGGAGTATTACAGTGCTAGAGGTCTTGGAATTGTTGGGTATTTCCACGCGAATGAGAGGTTTGATGAT GTCGATCTTGGTAACGTGGCCAAGAACATTGCTGATCACATCTATCGCTATTTCCCACAGGCTGCTATTCTTTTGCTAGATAACAAGAAGCTTGAGGCTT TACCAAAGGGGAAACATCGCAACCCTGTTGTGCAGCTCTACGCAAAGGATGCATACAGGAGTTGGAAGGCAGCTGGGCCAGATGGAGGCAGTCATTTGAT CTTTAAGGAGCCAGCTGCAAATACCATCTTGCTCGACTACATTTCCTCTGAGAAGTGGCAAGATGTGGTAGATTTTGACGATCACCTTGACGACATTTCC AAATCTGTTCAAGTAAAGTCAGCCTCGGAAGTTCGGTTTGGTTTGAACTTTAAACTATGGTTAGTTGATGTTGTTACACACCATGTCACATCATATGCTG GAGACGACAAATCAACCGACTAG
AA sequence Show only first row Show all	>Lus10043155 pacid=23168331 polypeptide=Lus10043155 locus=Lus10043155.g ID=Lus10043155.BGIv1.0 annot-version=v1.0 MSGDDGGGGELKYEMAQNAYIKLVLHSLKHKTSAVNGVLLGRASPLNDNVVEIEDSVPLFHNHLGLLPPLEISLIMIEEYYSARGLGIVGYFHANERFDD VDLGNVAKNIADHIYRYFPQAAILLLDNKKLEALPKGKHRNPVVQLYAKDAYRSWKAAGPDGGSHLIFKEPAANTILLDYISSEKWQDVVDFDDHLDDIS KSVQVKSASEVRFGLNFKLWLVDVVTHHVTSYAGDDKSTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10043155 [exp]	0	1
AT3G46430			unknown protein		Lus10004950 [exp]	10.5	0.7914
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	16.7	0.8157
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	34.0	0.7774
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	36.4	0.8023
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	36.4	0.8013
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	40.9	0.7935
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	57.4	0.7892
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Lus10028308 [exp]	60.9	0.7534
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10037653 [exp]	63.6	0.7780
AT5G15770		ATGNA1	glucose-6-phosphate acetyltran...		Lus10022713 [exp]	65.2	0.7678

Compare expression of checked genes

Lus10043155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.