Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13850 153 / 1e-48 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 143 / 9e-45 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G61030 147 / 2e-44 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 129 / 2e-37 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G47320 119 / 4e-34 RPS19 ribosomal protein S19 (.1) AT2G21660 96 / 6e-26 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 91 / 2e-24 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT1G18630 90 / 1e-23 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT4G24770 93 / 4e-23 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G08000 87 / 1e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032591 [exp] 222 / 9e-76 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 195 / 6e-65 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 190 / 4e-63 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10021154 [exp] 147 / 1e-44 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 146 / 3e-41 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 132 / 6e-39 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 132 / 2e-38 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10023569 [exp] 94 / 7e-25 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 93 / 1e-24 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059000 [exp] 162 / 3e-52 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 150 / 3e-47 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 149 / 3e-47 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 148 / 2e-45 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 146 / 2e-44 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.004G155300 [exp] 99 / 7e-27 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 98 / 2e-26 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G236300 [exp] 88 / 2e-23 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.014G157300 [exp] 88 / 6e-23 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 90 / 2e-22 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043158 pacid=23168049 polypeptide=Lus10043158 locus=Lus10043158.g ID=Lus10043158.BGIv1.0 annot-version=v1.0 ATGGCATTTTACAGCAAATTGGGTAGCCTAGTGAGGCAGAGTGTTTCCCTGACCAGTCCTGCTCCGATGGGATCTATGTTCAACTCGTTCCGTTGCATGT CTTCAAACAAGCTCTTCGTCGGAGGTCTTGCTTATGCAACTGATGATAACTCTCTGAAGGAGGCTTTTGACCGCTATGGTGAGGTGGTTGATGCCAAAGT TATCCTTGATAGAGATACTGGCAGGTCAAGAGGATTTGGGTTCGTTAACTTTGCAGACAACGAGGCTGCTAATTCAGCAGTGTCGTCCATGGATGGACAG GAGCTGCATGGTCGGAACATTCGTGTGAGTATTGCCAACGACAGACCCAGCGCTCCAAGGAGTTATGACAGCGGCTCTCGCGGAGGTGGAGGCTATGGCG GCGGTGGAGGCAGCAGAGGCTATGGCGGCCGTGATGATGATGGGTTCTAA
AA sequence Show only first row Show all	>Lus10043158 pacid=23168049 polypeptide=Lus10043158 locus=Lus10043158.g ID=Lus10043158.BGIv1.0 annot-version=v1.0 MAFYSKLGSLVRQSVSLTSPAPMGSMFNSFRCMSSNKLFVGGLAYATDDNSLKEAFDRYGEVVDAKVILDRDTGRSRGFGFVNFADNEAANSAVSSMDGQ ELHGRNIRVSIANDRPSAPRSYDSGSRGGGGYGGGGGSRGYGGRDDDGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	1.4	0.8933
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	1.4	0.8811
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	6.2	0.8504
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	10.1	0.7926
AT3G53740			Ribosomal protein L36e family ...		Lus10040728 [exp]	14.4	0.7372
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	15.4	0.8251
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	16.1	0.8351
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	18.2	0.8117
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	24.0	0.8068
AT1G73770			unknown protein		Lus10013498 [exp]	26.6	0.7252

Compare expression of checked genes

Lus10043158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.