Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23900 378 / 6e-116 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT1G53650 54 / 3e-07 CID8 CTC-interacting domain 8 (.1.2) AT3G14450 52 / 1e-06 CID9 CTC-interacting domain 9 (.1) AT3G49390 51 / 3e-06 CID10 CTC-interacting domain 10 (.1.2) AT1G32790 50 / 4e-06 CID11 CTC-interacting domain 11 (.1.2) AT5G24440 47 / 5e-05 CID13 CTC-interacting domain 13 (.1) AT4G10610 45 / 0.0001 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT4G13860 41 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032590 [exp] 1055 / 0 AT3G23900 647 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10035678 [exp] 52 / 1e-06 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032942 [exp] 52 / 2e-06 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10037265 [exp] 51 / 3e-06 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008851 [exp] 51 / 3e-06 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10008275 [exp] 51 / 4e-06 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10033242 [exp] 50 / 5e-06 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10032941 [exp] 46 / 8e-05 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10040636 [exp] 44 / 0.0009 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058300 [exp] 444 / 1e-140 AT3G23900 447 / 2e-142 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Potri.001G319000 [exp] 431 / 6e-136 AT3G23900 386 / 4e-119 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Potri.001G448800 [exp] 57 / 2e-08 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 56 / 6e-08 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.015G005400 [exp] 56 / 1e-07 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 54 / 2e-07 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.007G095800 [exp] 53 / 2e-07 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.011G152700 [exp] 53 / 5e-07 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.011G095800 [exp] 52 / 9e-07 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.005G073200 [exp] 51 / 1e-06 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0159 [flax] [poplar] E-set PF00630 [flax] [poplar] Filamin Filamin/ABP280 repeat
Representative CDS sequence Show only first row Show all	>Lus10043159 pacid=23168106 polypeptide=Lus10043159 locus=Lus10043159.g ID=Lus10043159.BGIv1.0 annot-version=v1.0 ATGGCTAACGACACTAGCAGTAGCAATGCCTTAGTTAAGCCGATATGGATGAAGCAAGCTGAGGAGGCTAAGCTTAAGAGCGAGGCTGAGAAAGCAGCGG CCGCGAAGGCTGCATTTGAGGCCACATTCAAAGATTTGAGTAACAGAACTGAAAATCCGGCTCCGGATTCCGATTCAGAGGAAGATGAGGAGAGAGATTT GGCTAACAAGCCCGTAGGCCCTGTGGACCCGGCCATGTGTACCGCTGCTGGAGTAGGCATTGCTGGTGGAACTGCTTGTGCTTCCTCAACCTTCACGGTG GTGACCAAGGATGCTGATGGCAGGAAGGTGCTGCACGGCGGGGCACATGTTAAGGTGAAAGTGTCGCCAGGGGTTGGTGTTGGTGGCACAGAACAGGATG GCATTGTTAAGGACCTTGGAGATGGGTCGTACACCGTTACTTATGTTGTTCCCAAGAGAGGGAACTATATGTTGCATATTGAGTGCAACGGAAAACCCAT CATGGGCAGTCCATTTCCTGTTTTTTTCAGCCAAGGCACTTCAAATGGTGGACTTCTTGGTGTGGCCCCTACTTCGAATTATCCAAACCTTGTCAATCAG ACTATGCCCAACATGCCAAATTATTCAGCATCTATGTCTGGGTCTTTCCCTGGATTGTTAGGCATGATTCCAGGAATTGTTCCTGGTGGTTCTGGTGGTG TTGTCTTGCCTGGAATTGGAGCGTCTCTTGGGGAAGTTTGTCGGGAATTTCTTAATGGTCGATGCACACAAGCAGATTGCAAGTTGAACCATCCTCCTCA CAACTTACTGATGACGGCATTGGCAGCAACAACCACAATGGGCAATCTCAGTCAGGTACCTATGGCACCTTCAGCAGCTGCAATGGCTGCTGCGCAGGCT ATAGTTGCAGCGCAAGCTCTTCAAGCTCATGCTGCTCAGCAAGCTTCAAAGTCCACTAAAGATGCATCTGGTTCATCGGACAGGTCTAGTAAGGACGAGA CACTGAAAAAGACGCTCCAAGTTAGCAATCTCAGCCCACTTCTGACGGTTGAACAGCTGAAACAACTCTTCAGCTTCTGCGGCACAGTGGTTGATTGTAC GATTACAGATTCGAAGCATTTTGCATACATTGAATACTCAAAACCCGGAGAAGCAACTGCTGCGTTGGCATTGAACAATATGGATGTTGCCGGAAGGCCT CTAAATGTGGAGATGGCTAAATCACTTCCCCAGAAACCTGTTGTTAATTCTTCTCTGTCCTCCTCCTCTTCTCTGCCAGTAATGATGCAGCAAGCTGTTA TCATGCAACAGATGCAATTTCAACAGGCTTTACTTATGCAACAAACAATGACTGCACAACAAGCAGCTAATCGAGCTGCAACAATGAAGTCTGCAACCGA GTTGGCTGCTGCCAGAGCTGCAGAAATTAGTAAGAAGATGAAAGCTGATGGGCTTGTGGATGAAGAGGAACATACAAAAGAGAAGTCCAAGTCGCCATCT CCACCACGAGCAAAATCGAAGTCAAGGTCCAGATCGCCAATAAATTACCGTAGAAATAGGAGGTCTCCTTCTTACTCACCCCCACCACGCCGTAGGGAAC GTAGATCTAGATCACCCTTGAGATCGTGGCGTTACTCAAAGTATGACAGTGATAGGCGCTCTTTCAGAGATGCCAGAGATCATGGTGGCAGAACTAGAAG ACAGGATTTGGATAGATCACTTGATCATAGTTTGTCAAGTTCAAGGAGACACAAGAGTCGAAGTGTTAGCCCGCGGACCAGAAAATCCTACAGGGAGGAT TCAGGTTCTCCAAGGTGCCGCCGAAAAAGTCCGCCACGTAGAACAGGAAAATCATCTCGTGGGGATTCTAGGTCACCTAGGCGTCACCGAGCTAGTAGGT CATCTCCAAAAAATGATGGTGATAGGAAGGTAAAACTGAGGGGACGCTCTCGCTCGAGAAGTGTGGAAGATGCAAATGACAAGACAAATGGGGTACTGGA TGAAGAAATAAAGCGAGACGAAAGGAGATCTAGATCACAATCTACTGAATTTCCACCTGACCAAGTCAAGTCATCCCCAACAAGTTCAACTGATACTGAA CAGAAGCTTAATATGAGGTCCGGGTCTATTTCAACGGATATCAAGCATCACATGGATGGCAGATTGGATGATACCAAGGGGGAAAGTTCTCGACGCCGGG GAAAGAGGTCTCGATCAAGATCTCCTGAAGCCAGTCGCAGGTCTAGGGAGAAAGGAGCTGGAAGCAGAGAGAGGAAGCCAAAACATCATGATAGAGATCG TTCTAGATCTTTTTCACCAGTTGATAGGCATCGCAGGAAAAGTAGGTCATCCCCAAGAGGCAGGGATGATGATAAATCAAAGAACAGAAGGCACTCTAAA CCAGACTCTCCTGATCGAATGAAAACCAGGCATAGGAGGGATGAAAACAGAGATGAAAAGCATACCCATCGCGGTAGAAGACGGTCACGGTCTCATGAAG GCAAGACTAATAATTCACCAAAACGTCTTGATGAGTATGAATCAAGGGAGGAGAAGAACTTGAGGTCAAAATCTGTAGAACGAAGGCATCACTCTAAAGA TAGCAAGAAGAAAAAGAAGGATGAAAGTTTAACTGATCATAGCAAGAGGTCGCACAGAATTGAACATCCAATCGACGAAGAAGGTTATGTTCAAGAAGAC TCATCAAAGACTAGGGATGGTGGAATAACTCGTTGTGAAGAAAAAGACCTTCATTTGAAGCAAACAGCACAACACATGACGTCAGACGAGGATGCTGTTC TAAATGGTAGAGGAACACCTAATAGTAATAGTGAAGGAGATGGGGAAGGTCACCATTGA
AA sequence Show only first row Show all	>Lus10043159 pacid=23168106 polypeptide=Lus10043159 locus=Lus10043159.g ID=Lus10043159.BGIv1.0 annot-version=v1.0 MANDTSSSNALVKPIWMKQAEEAKLKSEAEKAAAAKAAFEATFKDLSNRTENPAPDSDSEEDEERDLANKPVGPVDPAMCTAAGVGIAGGTACASSTFTV VTKDADGRKVLHGGAHVKVKVSPGVGVGGTEQDGIVKDLGDGSYTVTYVVPKRGNYMLHIECNGKPIMGSPFPVFFSQGTSNGGLLGVAPTSNYPNLVNQ TMPNMPNYSASMSGSFPGLLGMIPGIVPGGSGGVVLPGIGASLGEVCREFLNGRCTQADCKLNHPPHNLLMTALAATTTMGNLSQVPMAPSAAAMAAAQA IVAAQALQAHAAQQASKSTKDASGSSDRSSKDETLKKTLQVSNLSPLLTVEQLKQLFSFCGTVVDCTITDSKHFAYIEYSKPGEATAALALNNMDVAGRP LNVEMAKSLPQKPVVNSSLSSSSSLPVMMQQAVIMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKMKADGLVDEEEHTKEKSKSPS PPRAKSKSRSRSPINYRRNRRSPSYSPPPRRRERRSRSPLRSWRYSKYDSDRRSFRDARDHGGRTRRQDLDRSLDHSLSSSRRHKSRSVSPRTRKSYRED SGSPRCRRKSPPRRTGKSSRGDSRSPRRHRASRSSPKNDGDRKVKLRGRSRSRSVEDANDKTNGVLDEEIKRDERRSRSQSTEFPPDQVKSSPTSSTDTE QKLNMRSGSISTDIKHHMDGRLDDTKGESSRRRGKRSRSRSPEASRRSREKGAGSRERKPKHHDRDRSRSFSPVDRHRRKSRSSPRGRDDDKSKNRRHSK PDSPDRMKTRHRRDENRDEKHTHRGRRRSRSHEGKTNNSPKRLDEYESREEKNLRSKSVERRHHSKDSKKKKKDESLTDHSKRSHRIEHPIDEEGYVQED SSKTRDGGITRCEEKDLHLKQTAQHMTSDEDAVLNGRGTPNSNSEGDGEGHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	2.0	0.8992
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	2.4	0.8880
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	4.0	0.8876
AT2G40430			unknown protein		Lus10037530 [exp]	4.2	0.8732
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	4.7	0.8910
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	4.9	0.8689
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	5.9	0.8721
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	7.4	0.8622
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	7.9	0.8677
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	8.9	0.8739

Compare expression of checked genes

Lus10043159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.