Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55840 427 / 9e-148 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 419 / 3e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT3G07680 307 / 2e-102 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G22845 123 / 4e-32 emp24/gp25L/p24 family/GOLD family protein (.1) AT4G39180 87 / 8e-18 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 85 / 3e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G34580 85 / 4e-17 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 84 / 7e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G24840 83 / 2e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 83 / 2e-16 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032587 [exp] 559 / 0 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038752 [exp] 425 / 1e-146 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016628 [exp] 413 / 1e-141 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10039106 [exp] 412 / 2e-141 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10032588 [exp] 397 / 3e-137 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10016624 [exp] 373 / 4e-128 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022525 [exp] 371 / 2e-127 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022533 [exp] 368 / 6e-126 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10012315 [exp] 254 / 7e-82 AT3G07680 263 / 8e-90 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369400 [exp] 462 / 2e-161 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.006G004000 [exp] 438 / 1e-151 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 418 / 6e-144 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G369000 [exp] 322 / 5e-108 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 122 / 1e-31 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.005G119700 [exp] 84 / 1e-16 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.005G230500 [exp] 82 / 5e-16 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 81 / 5e-16 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.001G158700 [exp] 80 / 8e-16 AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G076200 [exp] 80 / 1e-15 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10043160 pacid=23168373 polypeptide=Lus10043160 locus=Lus10043160.g ID=Lus10043160.BGIv1.0 annot-version=v1.0 ATGGGTATGGATAATCAAGCAGCGATCCGGCGATTTCAGTCTCTGGTAGACAAAGATCTTGGGGAGCAAGTGTTGATTTTTATCAACAACTTATGTTCTA GTATGCACCAGGGATCTCCAACACAAACTTTGACAAAGTTTCTCATAGCAAGGGACTGGGATCTTTCCAAGGCTCATAAAATGTTGGTTGATTGTTTGCG GTGGAGGGTACAGAACGAGATTGACAGCATTCTGGCAAAACCAATCGTTCCAACGGAGTTGTATAGATCAGTTCGAGATACTCAGCTGTTAGGATTGTCA GGTTTTACAAAGGAGGGTATTCCGGTTATTGCTGTTGGCGTGGGGCAAAGCACACACGACAAAGCTTCTATGCATTACTATGTGCAGTTACACATCCAAA TGAATGAATATCGCGATCGTGTAGTATTGCCTGATGCAACCAAGAAATATGGAAAGCCCATTAGCACATGTATTAAGATCTTAGATATGACTGGTTTAAA GCTTTCAGCACTGAATCAAATTAAGCTATTAACTGCAATATCTACAATTGATGACCTCAACTATCCCGAGAAGACAGATACATATTACATTGTCAATGTC CCATACATCTTTTCGGCTTGTTGGAAGGTTGTGAAGCCTTTATTACACGAGAGGACAAGGAACAGAATTCAGGTGCTGCAAGGTTGTGGCAAAGAAGAAT TATTAAAGGCAAGGGACTTTCTTGCCTTCCAAATAATGGATGATTCATCGCTGCCTCATTTCTGCCAAAACAAAAGCTCCGGTCCGTCTCGTGTTGCTGC AGATGGAACGACCACCACCACAAACTGCTTCTCACTGGATCACCCTTTCCATCAGCAACTGTATAGCTATGTTAAACAACAATCCGACCTTCAGGAAGCC GTTTTGGCTCGAGAACAAGGTTCAGTTCATGTAGGCATCCCCGAGGCTGACCCTGAAGAGGCCAAGATAGTGAAGACGATCGAGTCGGAGTTTCATAAGA TGGGAATTTGGGGGATGAGAGGAGTTTTGTTTGCGATGGTTCTCGCTTTGATTTTAACACCTGAAAAGGTGTTTGGGATCAGATTTGTCATTGACAAAGA GGAATGTTTCTCTCATGATGTCAAGTACGACGGAGACACTGTTCATGTTTCCTTTGTTGTCATCAAGGCCGACGCTTCGTGGGACGATAGCGACGCGGGG ATCGATCTCGTGATAAAAGGACCTACCGGAGAACAAGTGCATGATTTTCGAGACAAAATAAGTGATATGCATGAGTTTGTGGCTCATCAAAAGGGAGTGC ATCGATTTTGCTTCTTGAACAAGTCACCCTATCATGAGACAATAGACTTCGATGTCCACGTGTCCCACTTTTCCTACTATGAGGAGCATGCAAAGGATGA GCATTTGGCACCTCTGATATACCACATATCAAGGCTGGAGGATGCTCTTTACAACATCCAATTCGAGCAGCATTGGCTCGAGGCACAAACTGAACGCCAG GCTCTCATAAACGATGCAATGGCGAAAAGAGCTGTCCAAAAGGCATTTTTCGAGTCAACGGCACTGATCGGAGCAAGCATTCTTCAAGTTTACCTTCTCC GCCGCCTCTTTGAACGGAAGATGGGCGTGTCTAGGGTTTGA
AA sequence Show only first row Show all	>Lus10043160 pacid=23168373 polypeptide=Lus10043160 locus=Lus10043160.g ID=Lus10043160.BGIv1.0 annot-version=v1.0 MGMDNQAAIRRFQSLVDKDLGEQVLIFINNLCSSMHQGSPTQTLTKFLIARDWDLSKAHKMLVDCLRWRVQNEIDSILAKPIVPTELYRSVRDTQLLGLS GFTKEGIPVIAVGVGQSTHDKASMHYYVQLHIQMNEYRDRVVLPDATKKYGKPISTCIKILDMTGLKLSALNQIKLLTAISTIDDLNYPEKTDTYYIVNV PYIFSACWKVVKPLLHERTRNRIQVLQGCGKEELLKARDFLAFQIMDDSSLPHFCQNKSSGPSRVAADGTTTTTNCFSLDHPFHQQLYSYVKQQSDLQEA VLAREQGSVHVGIPEADPEEAKIVKTIESEFHKMGIWGMRGVLFAMVLALILTPEKVFGIRFVIDKEECFSHDVKYDGDTVHVSFVVIKADASWDDSDAG IDLVIKGPTGEQVHDFRDKISDMHEFVAHQKGVHRFCFLNKSPYHETIDFDVHVSHFSYYEEHAKDEHLAPLIYHISRLEDALYNIQFEQHWLEAQTERQ ALINDAMAKRAVQKAFFESTALIGASILQVYLLRRLFERKMGVSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	0	1
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	3.0	0.8919
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	6.0	0.8691
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	8.9	0.8586
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	9.7	0.8879
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10000067 [exp]	10.2	0.7858
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	10.7	0.8472
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	11.5	0.8759
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	12.8	0.7617
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	14.3	0.8564
AT3G51580			unknown protein		Lus10025140 [exp]	14.4	0.8376

Compare expression of checked genes

Lus10043160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.