Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 887 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 863 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G16370 676 / 0 ATOPT3 oligopeptide transporter (.1) AT1G09930 669 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G10770 660 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 644 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53520 637 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 634 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53510 600 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032586 [exp] 1291 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1280 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1043 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1005 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 972 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 943 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 938 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 932 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 927 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 933 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 920 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 854 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 744 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 686 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 680 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.006G006000 [exp] 661 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.002G109300 [exp] 657 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.012G019500 [exp] 657 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.016G006500 [exp] 656 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10043161 pacid=23168038 polypeptide=Lus10043161 locus=Lus10043161.g ID=Lus10043161.BGIv1.0 annot-version=v1.0 ATGGGAACTTTACCAGGGAACCATGACGTGGTGGTGGAAGACCACAGCTCCGATGCTGCGAAAGTTGGAAACGAAACTGGGGAAGAAGAAGAGAACGACA GCCCAATTGAGGAAGTGAGGCTGACAGTACCAACAACCGACGATCCGACCCTGCCCGCACTGACATTCCGGACATGGGTTCTGGGGCTTTGTTCATGTGT GTTCCTGTCGGTTTTGAACCAGTTCTTCGGTTACCGTTACAACGGTCTGTACGTGGGGTCCACCTCTGCCCAGATTCTGGTGTTGCCGTTAGGCCAGTTG ATGGCCGCCTCGCTACCGGCGACCAGGTTCAGATTTCCGTTGACCAAGTGGTCGTTCACGTTGAATCCGGGGCCGTTCAATGTGAAAGAACATGTGTTGA TCACCATACTTGCCAACTGTGGAGCTGGCGGGATAGCGGGACTTTTCATTGTCACTGCCGTCAAGGCTTTCTACCACAGAAGCATCCATGTTGTGGCTGC TTTGTTACTTGTTTTCAGCACTCAGCTTCTTGGGTATGGATGGGCTGGGATCTTCAGGAAAATTCTGGTGGATTCTCCTCATATGTGGTGGCCTGGAAGT CTGCCTCAAGTCTCACTCTTCAGGGCGTTGCATGAAAAGGAGGAACGGGCTAAAGGAGGACAGACAAGGCTGCAGTTCTTCACCCTAGACTCCATCACTG CTCAACAGATCGGGTCGGGCTTGAATGGACTCGGCATCGGTTCGTTCGGTCTTGACTGGTCTACCGTTGCCGGATTCGTAGGGAGCCCTCTTGCCACCCC ATTTTTTGCTATCCTCAACACCATGGGCGGCTTCTTCCTGTTTGTTTATGTCATTCTCCCAATTGCTTACTGGAAGAATGCATTCAATGCAAGGAGTTTC CCCATGCTCTCTCAACAGACTTTTGATAGCTCTGGCCAACCCTACAACATCACCAAGATTCTTAACCAGAAAGAGTTCAGCATTGACCTCGGTCAATATG AAGATTACAGCAAGCTCTACCTTAGTTTCACTTTTGCGTTCAACTATGGGATCAGCTTTGCTGCCTTAATGGCGACTTTGGTCCATGTTGCACTCTTTGA TGGAAAATCTATTTGGGAAATGTTGAAGAGGGCATCTGCTGGTATGAAGGACCAATTCAACGACGTTCATACTAGAACTATGACGAAGAACTATGAAGCT GTTCCACAATGGTGGTTTCTGGTGATAATGATAGTATCGTTAGCACTTTCTTTCCTTGCTACACAAGGATTCAACAGACAACTTCAGCTTCCATGGTGGG GACTTATTATGTCATGTGCCATAGCATTTGTTGTCATCTTGCCCACTGGGGTACTTATTGCCTCTGCAAATCAGGGAATCGGGCTAAACGTCATCACAGA GCTGATAATCGGTTACTTATACCCCGGTAGACCGATTGCCAACGTTGCATTCAAAACGTATGGAACAGTCAGCACGTGGCAAGCATTGAGCTTCCTATCA GACTTCAAGCTGGGCCATTACATGAAAGTTGCACCGAAATCCATGTTTACAGTTCAGCTAGTGGGCACAGTGGTAGCATCCTTGGTCCAGTTCGGAACCA CATGGTGGATATTATCAAGCATCAAAGACATATGCGACACTACGAAATTACCCAAGGGAAGTCCATGGACATGTCCTGGATACGATGTCTCCTTCAGCGC TTCAATCATCTGGGGAGTCGTGGGACCGCTTCGAATCTTCAACGTTCGGGGAGTGTACCCACAGATGAACTGGTTCTTCCTCATCGGCACCTTTGCTCCG GTTCCGGTCTGGGCGCTCTCGAGGAAGTACCCAGAGAAAAAATGGATAAGGATGATCTACATGCCAATCATACTGTCCGGAATGGGCGGGTTGCTGCCGG CTAAGCCCATTCACTATTTGTCATGGGGAGCTGTGGGAGTGTTCTTCAACTACTATGTTTACAGCAAGTACAAAGGATGGTGGGCTAGGCACACGTACAT TCTGTCGGCGGCGTTGGATGTTGGGATTGCATTCATGGGGTTGTTGCTTTACGTCACACTTCAGAACAAAGAGATCTATGGGCCGCAATGGTGGGGACTT CAAGCTGATGACCATTGCCCTTTAGCTAAATGCCCAACTGTGCCTGGGATCTTTGTCGAAGGATGCCCTGCGATTCACTGA
AA sequence Show only first row Show all	>Lus10043161 pacid=23168038 polypeptide=Lus10043161 locus=Lus10043161.g ID=Lus10043161.BGIv1.0 annot-version=v1.0 MGTLPGNHDVVVEDHSSDAAKVGNETGEEEENDSPIEEVRLTVPTTDDPTLPALTFRTWVLGLCSCVFLSVLNQFFGYRYNGLYVGSTSAQILVLPLGQL MAASLPATRFRFPLTKWSFTLNPGPFNVKEHVLITILANCGAGGIAGLFIVTAVKAFYHRSIHVVAALLLVFSTQLLGYGWAGIFRKILVDSPHMWWPGS LPQVSLFRALHEKEERAKGGQTRLQFFTLDSITAQQIGSGLNGLGIGSFGLDWSTVAGFVGSPLATPFFAILNTMGGFFLFVYVILPIAYWKNAFNARSF PMLSQQTFDSSGQPYNITKILNQKEFSIDLGQYEDYSKLYLSFTFAFNYGISFAALMATLVHVALFDGKSIWEMLKRASAGMKDQFNDVHTRTMTKNYEA VPQWWFLVIMIVSLALSFLATQGFNRQLQLPWWGLIMSCAIAFVVILPTGVLIASANQGIGLNVITELIIGYLYPGRPIANVAFKTYGTVSTWQALSFLS DFKLGHYMKVAPKSMFTVQLVGTVVASLVQFGTTWWILSSIKDICDTTKLPKGSPWTCPGYDVSFSASIIWGVVGPLRIFNVRGVYPQMNWFFLIGTFAP VPVWALSRKYPEKKWIRMIYMPIILSGMGGLLPAKPIHYLSWGAVGVFFNYYVYSKYKGWWARHTYILSAALDVGIAFMGLLLYVTLQNKEIYGPQWWGL QADDHCPLAKCPTVPGIFVEGCPAIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	0	1
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	3.2	0.9060
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10003432 [exp]	4.2	0.8584
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	4.5	0.8931
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	5.7	0.8950
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	7.7	0.9013
AT5G54200			Transducin/WD40 repeat-like su...		Lus10004966 [exp]	9.0	0.7669
AT5G37730			unknown protein		Lus10033584 [exp]	9.5	0.8973
					Lus10017380 [exp]	10.5	0.7566
AT5G54060		UF3GT	UDP-glucose:flavonoid 3-o-gluc...		Lus10004381 [exp]	12.7	0.8861
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	14.1	0.8667

Compare expression of checked genes

Lus10043161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.