Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55640 163 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367200 [exp] 169 / 4e-55 AT5G55640 146 / 1e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043162 pacid=23168299 polypeptide=Lus10043162 locus=Lus10043162.g ID=Lus10043162.BGIv1.0 annot-version=v1.0 ATGTTAGATACCGATGGGTTCGTAATTCCAAGCTTGGGAATCGAAAACAGAGATCAATCTACACATAATGATTCAGAAATAGACGCCTTGAAACCTCCTT CTCCAAAGGCTAAAAAGGAAGAACACATTTACCTAGGTCCTCACGGGGCGCCACCTTCACAATTAAAGCATCAAGAACTGAACTTGTCGAACCGGAAACA ACGGTTTAAGCAGAAGCTGAAGGATGCTGATAAGAGGATCAGCGGAACAGGGCGCGAGAATAAGTTGGAGAATCTGCAGGAACTAGTTGGCGGAGAAGCG AAAACAGGCACAAACAACTTGTTGAAGAGCTCTCCTAAGGATTGGCTAGACCCACATTGCGATGAATCCCAGTTTGAGAAGCGGCATCCCCGGTGA
AA sequence Show only first row Show all	>Lus10043162 pacid=23168299 polypeptide=Lus10043162 locus=Lus10043162.g ID=Lus10043162.BGIv1.0 annot-version=v1.0 MLDTDGFVIPSLGIENRDQSTHNDSEIDALKPPSPKAKKEEHIYLGPHGAPPSQLKHQELNLSNRKQRFKQKLKDADKRISGTGRENKLENLQELVGGEA KTGTNNLLKSSPKDWLDPHCDESQFEKRHPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55640			unknown protein		Lus10043162 [exp]	0	1
AT2G15910			CSL zinc finger domain-contain...		Lus10023841 [exp]	1.4	0.8317
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10013089 [exp]	5.5	0.7954
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	7.9	0.7795
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10035800 [exp]	8.1	0.7929
AT5G04000			unknown protein		Lus10018038 [exp]	8.9	0.7919
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10017055 [exp]	9.8	0.7618
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	11.7	0.7922
AT4G18372			Small nuclear ribonucleoprotei...		Lus10000241 [exp]	12.2	0.7561
AT3G55820			Fasciclin-like arabinogalactan...		Lus10040220 [exp]	13.6	0.6731
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10029014 [exp]	14.3	0.7208

Compare expression of checked genes

Lus10043162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.