Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55880 599 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) AT5G28030 130 / 2e-34 DES1 L-cysteine desulfhydrase 1 (.1.2) AT5G28020 129 / 6e-34 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 120 / 1e-30 ATCYSD1 cysteine synthase D1 (.1) AT4G14880 119 / 4e-30 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 114 / 6e-28 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G61440 113 / 7e-28 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G59760 114 / 1e-27 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G03630 108 / 7e-26 CS26 cysteine synthase 26 (.1) AT3G22460 99 / 3e-23 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032583 [exp] 814 / 0 AT1G55880 609 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Lus10019002 [exp] 134 / 2e-35 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10014765 [exp] 118 / 3e-29 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10019003 [exp] 114 / 2e-28 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 114 / 2e-28 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10025589 [exp] 112 / 3e-27 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10027056 [exp] 112 / 4e-27 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10009521 [exp] 101 / 3e-23 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10020342 [exp] 92 / 5e-20 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367000 [exp] 664 / 0 AT1G55880 605 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Potri.005G048132 [exp] 132 / 9e-35 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.013G035200 [exp] 129 / 4e-34 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 128 / 1e-33 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.005G048066 [exp] 127 / 5e-33 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048400 [exp] 123 / 1e-31 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 121 / 5e-31 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 120 / 1e-30 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.002G160800 [exp] 118 / 1e-29 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.008G153300 [exp] 117 / 1e-29 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10043164 pacid=23168415 polypeptide=Lus10043164 locus=Lus10043164.g ID=Lus10043164.BGIv1.0 annot-version=v1.0 ATGGGACCTGGAGGGATACCTAATGTTGCAGTTATGGCGGCTATCTCCGTCTCCACGGTGGTCTTCTCTTACTGTGTCTGCTGCTACTGGTTCACCAGCC GAGCTCATTGTTCGTCGGAGAAGCAAAAGAAGAAGGGCAGAAATGGAGTTGTGGATGCAATTGGGAACACTCCGTTGATCAGAATCAACAGCTTATCTGA CGCCACCGGCTGTGAAATTCTAGGGAAGTGCGAGTTTCTGAATCCCGGTGGGAGTGTCAAGGACAGAGTTGCAGTTAAAATCATTGAAGAAGCGTTGGAA TCAGGTAAGCTTAGTAGGGGTGGAGTCGTGACAGAGGGAAGCGCGGGGAGTACTGCTATTAGCTTAGCAACTGTTGCTCCTTCCTATGGCTGCAAATGCC ATGTTGTTATCCCTGATGATGCTGCTATAGAGAAGTCTCAAATTCTGGAGGCACTGGGGGCTACGGTTGAAAGAGTGAGGCCAGTTTCAATCACCCATAG AGACCACTATGTTAACATTGCAAGGCAACGGGCAGTCGAAGCTAATGAATTTGCTGCAAAGCTCAGGAAAATTGCTCAAGTTGAGGGTAAAGACATCACC CAAGTTGAAGGTTATGAAACTGAAGGAGAGAAGCAAGATTCTGTTGTCGTCGTCCCATACTACGGTAATGGTGGTTTCTTTGCTGATCAGTTTGAAAATT TGGCAAATTTCAGGGCCCATTATGTGGGCACTGGCCCTGAGATTTGGGAGCAAACTGGTGGTGCCTTGGATGCATTTGTAGCAGCTGCAGGCACCGGTGG CACTGTTGCTGGTGTTTCCACATTTCTCCAGGAGAAGAATCCGAATGTGAAATGCTTCCTGATAGATCCTCCTGGTTCTGGTTTGTTTAATAAAGTAACT AGAGGGGTAATGTACACCAAAGAGGAAGCTGAAGGAAAGAGGCTAAAGAACCCATTCGACACAGTTACCGAAGGGATCGGAATCAATAGATTGACGAAGA ATTTCTCGATGGCTAAACTTGATGGTGCATTTCGAGGCACAGATAAGGAAGCTGTTGAGATGTCTAGGTTTCTTGTTCTGAAGGATGGCCTGTTTCTCGG TAGTTCTTCAGCTATGAATTGTGTTGGTGCTGTGAGAGCGGCGCAGTCGCTCGGACCGGGTCACACCATTGTAACCATTCTTTGTGATAGTGGGATGAGA CATTTGAGTAAATTCTGCAACGCTCAGTATCTCTCTGAGCATGGTTTGACACCCACTGCTACTGGTTTAGAGTTCCTCGGAATCAACTGA
AA sequence Show only first row Show all	>Lus10043164 pacid=23168415 polypeptide=Lus10043164 locus=Lus10043164.g ID=Lus10043164.BGIv1.0 annot-version=v1.0 MGPGGIPNVAVMAAISVSTVVFSYCVCCYWFTSRAHCSSEKQKKKGRNGVVDAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVKIIEEALE SGKLSRGGVVTEGSAGSTAISLATVAPSYGCKCHVVIPDDAAIEKSQILEALGATVERVRPVSITHRDHYVNIARQRAVEANEFAAKLRKIAQVEGKDIT QVEGYETEGEKQDSVVVVPYYGNGGFFADQFENLANFRAHYVGTGPEIWEQTGGALDAFVAAAGTGGTVAGVSTFLQEKNPNVKCFLIDPPGSGLFNKVT RGVMYTKEEAEGKRLKNPFDTVTEGIGINRLTKNFSMAKLDGAFRGTDKEAVEMSRFLVLKDGLFLGSSSAMNCVGAVRAAQSLGPGHTIVTILCDSGMR HLSKFCNAQYLSEHGLTPTATGLEFLGIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10043164 [exp]	0	1
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034719 [exp]	3.9	0.6741
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	6.6	0.6985
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	11.5	0.6875
AT4G28020			unknown protein		Lus10006992 [exp]	14.4	0.6575
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	36.8	0.6623
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Lus10034313 [exp]	39.6	0.5797
AT1G72550			tRNA synthetase beta subunit f...		Lus10009382 [exp]	46.7	0.6477
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10037062 [exp]	60.4	0.6026
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	74.3	0.5934
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	75.0	0.6356

Compare expression of checked genes

Lus10043164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.