Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55900 353 / 8e-121 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G29770 84 / 3e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 79 / 7e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 77 / 7e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 72 / 5e-14 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 71 / 8e-14 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT4G18140 63 / 1e-10 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G46410 63 / 1e-10 SSP4 SCP1-like small phosphatase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032582 [exp] 585 / 0 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016610 [exp] 484 / 2e-172 AT1G55900 415 / 4e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004414 [exp] 469 / 8e-167 AT1G55900 411 / 1e-143 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028284 [exp] 88 / 1e-19 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 83 / 1e-17 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 82 / 2e-17 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 82 / 3e-17 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 81 / 5e-17 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004596 [exp] 73 / 6e-14 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093000 [exp] 442 / 5e-156 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G364500 [exp] 437 / 3e-154 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.011G072000 [exp] 88 / 1e-19 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 86 / 7e-19 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 84 / 3e-18 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 84 / 5e-18 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 79 / 9e-16 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 76 / 7e-15 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.006G100800 [exp] 70 / 2e-13 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G173700 [exp] 71 / 3e-13 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10043165 pacid=23167995 polypeptide=Lus10043165 locus=Lus10043165.g ID=Lus10043165.BGIv1.0 annot-version=v1.0 ATGGCTGCCTTCGTCCTTCTATCTCGCATTGCCTCAATCGTCTCTCGCTCCCTTCGCCGCAATCGATCATACAGCACCGCAGAATCGGCCTCTTCCAACG CCATTAAAGAATCCATCATTTCTCCCCCGGCGCACGTCGCTGCTGCTCCAGCTTCCGCTACTGAGAAAGGTCCGGCGAGCAAAAGATGGGAGTTCGTTAA GTACGGACTGATTGGGACTCTCACCGGCGCTACTGCTCTTACCGCCTACGTCACTTACACATATCCGTTGGAGGAAGTGGAGAAACGGACCAAGAAACTG CAGGAATCAGTGCATTATACTGCTAGCGACGAGGACTCGGATGCCGAGAGATACAGGAAAATGCTCTATTCTGCTGCAATGTGTGTCCCTGCCAAAGTAG CTGAAATTTACTTGGGTGTACGTACGGCATTGGAAGAGCATGTTAAAGGTTTTACTGAGCCAACTTCAGACAAGCTGCTACCTGATCATCATCCAGCTGA GCAGCATGTGTTCACTCTTGTTTTAGATCTCAACGAGACAATGATCTACAGTGATTGGACTCGTGAAAGAGGATGGAGAACGTTCAAAAGACCTGGAGTT GATGACTTCTTGCAACACCTTGCAAAATTCTTTGAGATTGTGATTTACTCGGATCAACTCAGCATGTACGTTGATCCTGTTGTTGACAGGTTGGATACAA ACCACTGTATACGATACAGGCTAGCAAGAGGTGCAACAAAATATCAAGATGGAAAGCATTACCGGGATTTGTCCAAACTGAATAGAGACCCTGGCAAGAT AATATACGTCAGTGCAAATGCATTTGAGAACAGCCTTCAGCCGGAGAATTGTGTTCCAATTAAGCCATTCAAGATGGATGAGAAAGAAGGCGAGGTGCCT CTGGATACAGCACTTGTGGATCTTAATCCTTTTCTTGAATATGTGGCACTAAATAGTCCTCCTGATATTAGGGCCGTTCTGTCAAGCTATGAAAGGAAGG ACATAGCGAAAGAGTTTCTTGAGCGCTGTAAAGATTACCAGCAAAGGTAA
AA sequence Show only first row Show all	>Lus10043165 pacid=23167995 polypeptide=Lus10043165 locus=Lus10043165.g ID=Lus10043165.BGIv1.0 annot-version=v1.0 MAAFVLLSRIASIVSRSLRRNRSYSTAESASSNAIKESIISPPAHVAAAPASATEKGPASKRWEFVKYGLIGTLTGATALTAYVTYTYPLEEVEKRTKKL QESVHYTASDEDSDAERYRKMLYSAAMCVPAKVAEIYLGVRTALEEHVKGFTEPTSDKLLPDHHPAEQHVFTLVLDLNETMIYSDWTRERGWRTFKRPGV DDFLQHLAKFFEIVIYSDQLSMYVDPVVDRLDTNHCIRYRLARGATKYQDGKHYRDLSKLNRDPGKIIYVSANAFENSLQPENCVPIKPFKMDEKEGEVP LDTALVDLNPFLEYVALNSPPDIRAVLSSYERKDIAKEFLERCKDYQQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	0	1
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	4.8	0.8297
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10015553 [exp]	9.5	0.7929
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	19.4	0.8254
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10004367 [exp]	20.6	0.8137
AT3G25160			ER lumen protein retaining rec...		Lus10038198 [exp]	24.1	0.7886
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	31.2	0.8139
AT1G49230			RING/U-box superfamily protein...		Lus10005816 [exp]	41.5	0.7568
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	57.4	0.7593
AT1G33350			Pentatricopeptide repeat (PPR)...		Lus10027311 [exp]	58.3	0.7766
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	84.9	0.7783

Compare expression of checked genes

Lus10043165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.