Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26640 416 / 4e-140 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 244 / 2e-74 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 241 / 3e-73 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 225 / 2e-67 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G07100 216 / 2e-67 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G26440 223 / 7e-66 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 215 / 3e-64 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G30250 205 / 9e-61 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 202 / 5e-59 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G37260 176 / 4e-50 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032580 [exp] 578 / 0 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 564 / 0 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 528 / 0 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10032887 [exp] 283 / 6e-87 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 266 / 1e-80 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10006368 [exp] 257 / 3e-79 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10012322 [exp] 254 / 3e-79 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10001265 [exp] 253 / 1e-77 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 253 / 3e-77 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361600 [exp] 501 / 8e-174 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 484 / 8e-167 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 264 / 6e-80 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 261 / 7e-80 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 253 / 2e-77 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 253 / 3e-77 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 249 / 1e-75 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.001G472800 [exp] 252 / 2e-75 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.014G164300 [exp] 241 / 2e-73 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.013G086000 [exp] 243 / 5e-72 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10043167 pacid=23168026 polypeptide=Lus10043167 locus=Lus10043167.g ID=Lus10043167.BGIv1.0 annot-version=v1.0 ATGGGGATGACTACTAATAGTGCTACCGTTCCTCCTGCTTCTGCTGCCACCGATATCTCTGGAGCTAGGTATAAGCTGATGTCGCCGGCCAAGCTTCCGA TCTCCAGGTCTCCCTGCGTCACTATCCCTCCAGGTCTTAGTCCCACTTCGTTTCTAGACTCTTCTGTCCTGCTCTCCAATTTTAAGACAGAGCCTTCCCC AGCAGCAGGGTCCTTCATGAAGCCTCAATCAGTGCGTGCGTCTTCCATATCGAATCCTTATTCAGTAACTGCAGTTTCTTCTGATACATTCAGAGAAAGA ATATCCAGCTTCTTTGAGTTCAGGCCTCCATGTATAACAAATACGACTTCTGCAGATATGAACAATCACAGAAGCGAACAATCTATACAATACTATGGCA CTTCTCAGTCCCAAATCCAATCAGTTTCATCGTTGTCTTCACCTAAGGCTGAGATAGTCACTAACTCAAATGAGTTGCGTCCTCTTCATATGGTTTCTTC TGGAGCTACTGCACCTGTTCAAGATGAAGCTGAAGAACAAAACCAGATAGGAAACACCAACAGTGGCACAACGAATTCAACGACATCAGATGATGGATAT AACTGGCGTAAATATGGACAGAAGCATGTGAAGGGAAGTGAATTTCCTCGCAGCTATTACAAATGTACACATCCCAATTGTGAGGTAAAAAAGTTATTTG AACGCTCTCATGAGGGGAAAATCACAGATATTATCTACAAGGGCACACATGACCATCCTAAACCTCAAATTAGTCGCCGTTACACTACTGGAGCCCTTTT GTCCGTGCAAGAAGAAACACCTGATGGTGAAGCGTCCCACACAACGGGACAAAATGGAGGTACTCTTGAACTATCCCTTGCTGCAGCAACTGGTGAAATT GCAGAAGGTCCTGAAGATGATGAGGATCCCTTCTTTTCAAAGCGCAGGAAAATGGATACTGCTAGTTTTGATGTCACCCCAGTGGTTGTCAAGCCTATCC GTGAACCACGGGTTGTTGTTCAGACTCTTAGTGAGGTTGATATACTTGATGACGGCTACAAGTGGCGCAAATATGGGCAGAAAGTAGTGAGAGGAAATCC TAATCCGAGGAGTTATTACAAGTGTACAAATGGTGGGTGCCCGGTGAGAAAGCATGTAGAGAGGGCATCACATGATCTGAAAGCTGTTATAACTACTTAC GAAGGAAAACACAACCATGATGTACCCACAACAAGGACTAGCAGTAATGCAGCAGCAGGAGGCTCTGCGGCTATGATGAGCAGCCGATTGAGGATCGGAT CAGATGAAAGCGAAACGATCAGCCTTGGTCTCAGGGTTGGTATGTATTCTGAATCTAGTGACCAACAACAACAACCACTTCTCTCCCAAAATGGGCAGAG TAGTAGTTGGTCTAGTTTCAGCAGAGTTGCAAATCGCCATGGCGTTCACATGAACCAGTATGTGTCTGGACAAACTCCGAATGAAGTGCTTAGTGTTGGT CTCCCAACTCTGAAGCATCGATCATCTTACCCTTATCCACCAAACACGGGAACATTACTAAGTGGTCCTTGA
AA sequence Show only first row Show all	>Lus10043167 pacid=23168026 polypeptide=Lus10043167 locus=Lus10043167.g ID=Lus10043167.BGIv1.0 annot-version=v1.0 MGMTTNSATVPPASAATDISGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLDSSVLLSNFKTEPSPAAGSFMKPQSVRASSISNPYSVTAVSSDTFRER ISSFFEFRPPCITNTTSADMNNHRSEQSIQYYGTSQSQIQSVSSLSSPKAEIVTNSNELRPLHMVSSGATAPVQDEAEEQNQIGNTNSGTTNSTTSDDGY NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHEGKITDIIYKGTHDHPKPQISRRYTTGALLSVQEETPDGEASHTTGQNGGTLELSLAAATGEI AEGPEDDEDPFFSKRRKMDTASFDVTPVVVKPIREPRVVVQTLSEVDILDDGYKWRKYGQKVVRGNPNPRSYYKCTNGGCPVRKHVERASHDLKAVITTY EGKHNHDVPTTRTSSNAAAGGSAAMMSSRLRIGSDESETISLGLRVGMYSESSDQQQQPLLSQNGQSSSWSSFSRVANRHGVHMNQYVSGQTPNEVLSVG LPTLKHRSSYPYPPNTGTLLSGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	1.0	0.9684
					Lus10033847 [exp]	2.8	0.9634
					Lus10018997 [exp]	3.5	0.9594
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	4.0	0.9089
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	4.1	0.8984
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	6.6	0.9057
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	8.4	0.9230
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	9.2	0.9327
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	9.5	0.8970
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	10.5	0.8757

Compare expression of checked genes

Lus10043167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.