Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 430 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 400 / 7e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 384 / 2e-129 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G47620 351 / 5e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 247 / 5e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 242 / 5e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 189 / 2e-55 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 186 / 4e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 179 / 1e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 165 / 1e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032579 [exp] 835 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 444 / 4e-152 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 440 / 1e-150 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 435 / 1e-148 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 428 / 1e-146 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 392 / 1e-131 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 332 / 6e-111 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 251 / 7e-79 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 249 / 4e-77 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361300 [exp] 627 / 0 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 612 / 0 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 516 / 0 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 508 / 1e-177 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 495 / 1e-172 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 486 / 4e-169 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 271 / 1e-85 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 264 / 3e-83 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 261 / 2e-81 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 254 / 1e-79 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043168 pacid=23167964 polypeptide=Lus10043168 locus=Lus10043168.g ID=Lus10043168.BGIv1.0 annot-version=v1.0 ATGGAATCAGATCTTGGTAAGCTCTTCATTGGGGGGATCTCTTGGGACACTGATGAGGAACGCCTCAATGAGTACTTTACCAAGTATGGAGAAGTGGTGG AGGCGGTCATCATGAGAGATCGAGCTACAGGTCGTGCTCGTGGCTTTGGATTTGTTGTATTTGCAGATCCTGCTGTTGCTGAGAGAGTTATTATGGACAA ACATGTTATTGATGGCCGTACTGTTGAAGCAAAGAAGGCTGTACCTAGGGATGATCAACACATTTTGAACAGAAACATAAGCACTAATTCTCCAGGGCCA GGGCGAACCAAGAAGATTTTCGTTGGTGGTCTGGCATCTACCGTTACAGAAACTGATTTCAAGAATTACTTTGAGCAGTATGGCAACATAACTGATGTGG TGGTGATGTATGATCACAACACTCAGCGACCAAGAGGCTTTGGCTTCATCACTTATGATTCGGAGGAGGCTGTGGACAGAGTGCTTCACAAGACGTTTCA CGAACTTAATGGTAAAATGGTTGAGGTCAAACGAGCAGTCCCGAAGGAACTGTCTCCTGGTCTGACGACCCGAAGCCCTTTAATGGGTGGCTATGGCTAT GGTTTGAACAGACCTAGCAGATTCCTTAATGCCTATGCTCAGGGTTATAACATGAACTCAATTGGAGAATTCGGAATGAGAGTGGATGGTAGATTTAGTC CTCTTCCTAACAACCGAAGCGGATTTTCACCCTTTGGCACTACTGGCTATGGAATGGGAGTGAATATGGAGCCACGTTTGAGTCCAAACTATAACGGGGG ATCCAACTTTAGCAGTACTCCGGTTTATGGCCGGATGTTGAGTCCCTATTTCAGTGGTAATTCAAGCAGGTACAATACTCCAGTAGGTTATAGTGCTGGG AGTGCAAGAAACGATCCGGCTTTGGGCATAACTTCTCGTAATGTTTGGGGAAATGGCGGTCTGATTGCTCCCTCTAATCGGTCATCCAATTCTGGTGCTT TTGTGGGTTCTGGAAGTGGAGTGTTTGGTGGCTCACTAGGAAATAGAGGAGGAAGTTGGGGGCCGTCTTCCGTGTCGGGTCAAGTTGGAGGGAATGCTTC AGCCTATAATAGTGCAAGTGTCGGTTATGGGAGCGGAGAACACAGTTACGAACTAGGTGGCACCACCACGGGTTATGGACGGAATGTTGGTTTGAATGTA GCACCTCCTGCATCTTCATTTGATGGGGTTACTGCCAATTATGAAGGGTCCTATGGGGACTTTTACAATAGTAACTCCGTTTATGGTGATTCAACTTGGC GATCTCGGACTCCTGAGCTGGATGGCTCTGGCTCCTTGAGCTATGGGCTTGGCAGCATAGGTTCAGATGCAACAGTGAAGACTTCTGAGGGTTACATAGG AAGTTATAGTGTTACCAATAGACAACCAAATAGAGGTACAATTTCCATATTGCCACTGCCTAATTGCAAATCTCTTTCCACTTTAAGCATTATCTTGTAG
AA sequence Show only first row Show all	>Lus10043168 pacid=23167964 polypeptide=Lus10043168 locus=Lus10043168.g ID=Lus10043168.BGIv1.0 annot-version=v1.0 MESDLGKLFIGGISWDTDEERLNEYFTKYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHVIDGRTVEAKKAVPRDDQHILNRNISTNSPGP GRTKKIFVGGLASTVTETDFKNYFEQYGNITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKELSPGLTTRSPLMGGYGY GLNRPSRFLNAYAQGYNMNSIGEFGMRVDGRFSPLPNNRSGFSPFGTTGYGMGVNMEPRLSPNYNGGSNFSSTPVYGRMLSPYFSGNSSRYNTPVGYSAG SARNDPALGITSRNVWGNGGLIAPSNRSSNSGAFVGSGSGVFGGSLGNRGGSWGPSSVSGQVGGNASAYNSASVGYGSGEHSYELGGTTTGYGRNVGLNV APPASSFDGVTANYEGSYGDFYNSNSVYGDSTWRSRTPELDGSGSLSYGLGSIGSDATVKTSEGYIGSYSVTNRQPNRGTISILPLPNCKSLSTLSIIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	1.0	0.9274
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10035737 [exp]	2.0	0.9060
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	2.4	0.8975
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	3.5	0.9162
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	3.5	0.9123
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	5.9	0.9057
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	10.2	0.8809
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	11.2	0.8951
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	11.5	0.8812
AT4G01400			unknown protein		Lus10030195 [exp]	13.4	0.8917

Compare expression of checked genes

Lus10043168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.