Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 239 / 5e-77 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G12300 176 / 3e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032578 [exp] 483 / 1e-172 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10003765 [exp] 300 / 3e-100 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009692 [exp] 176 / 1e-52 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 134 / 4e-37 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10036036 [exp] 122 / 6e-32 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006523 [exp] 42 / 0.0003 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088400 [exp] 290 / 5e-96 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 280 / 4e-92 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.009G070400 [exp] 201 / 2e-61 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 197 / 8e-60 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10043169 pacid=23168108 polypeptide=Lus10043169 locus=Lus10043169.g ID=Lus10043169.BGIv1.0 annot-version=v1.0 ATGGGAGGTAGCCTTTTTCCTTCTGTTCTTGACATTCCGTTCTCTGAGCAGGAGAAGCACAAAACCGACGAGCATTCTGAAACGAATGGAAAGCTCGAAA ATTTCATCGGTGTGCTCGAAGTTTATGTACACCAAGCTAGAGATATCCACAACATATGCAACTACCACAAACAAGATGTTTACGCCAAGATTCGCCTCAC CAACCATCCCGAACACACCACGGTCTCCACCAACACCATCAACGGAGGCGGTAGGAATCCCATGTTCAACGAGAATCTTCGAATCAACGTGAGCACACTC GACTGCTTGCTGAAATGCGAGATATTCATGATGAGTCGGGTGAAGAATTACCTCGAGGACCAGCTGTTGGGGTTTGCGTTGGTTCCTTTGTCACAAGTAC TTATGATGGAGAACGGGAAGTTGGAAAAAAAAGAGTTCTCTCTTTCTTCAACTGATATGTTCCATTCGCCTGCTGGATATGTTCAGCTTTCCCTTTGTTA TAATGGAGCTTCAACCGAGGTCATGCTGATTGCATCGCCTGCTACAGTTGGAATCATGGAGTCGCAGGAATCATTTCAAGGTGAACTCGACAAGCTCGAG TTTCCGGATCCTAACATTGCAAATGAAAACCAGATGATGGTTTCTGAGTATTTCGAGTTTCCGTCTAGTGATCTCGAATCTCAAACCTCCGAGTCATTGG TCACTTCTGCAAGAATCTCATGTTCTTCGAATGGTTTGAGCTCGGAAAACTCTAAGGCCCCAAAGGCCTCCGAAACTGTGTTTGGAGAAGAGAACTCGGT CCGCAAAGACAAGGAAACTGTAGATGATGGTGCAAATGGAGAAAACTATTCATCATCGAGGGAAAGAGGTTACGAAACGAGTTATCGAGGTGGACATTGA
AA sequence Show only first row Show all	>Lus10043169 pacid=23168108 polypeptide=Lus10043169 locus=Lus10043169.g ID=Lus10043169.BGIv1.0 annot-version=v1.0 MGGSLFPSVLDIPFSEQEKHKTDEHSETNGKLENFIGVLEVYVHQARDIHNICNYHKQDVYAKIRLTNHPEHTTVSTNTINGGGRNPMFNENLRINVSTL DCLLKCEIFMMSRVKNYLEDQLLGFALVPLSQVLMMENGKLEKKEFSLSSTDMFHSPAGYVQLSLCYNGASTEVMLIASPATVGIMESQESFQGELDKLE FPDPNIANENQMMVSEYFEFPSSDLESQTSESLVTSARISCSSNGLSSENSKAPKASETVFGEENSVRKDKETVDDGANGENYSSSRERGYETSYRGGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	0	1
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	2.0	0.8676
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	2.0	0.8370
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	3.9	0.8395
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	4.0	0.8030
AT5G61040			unknown protein		Lus10021155 [exp]	5.5	0.8518
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	6.0	0.8210
AT4G33985			Protein of unknown function (D...		Lus10014064 [exp]	6.2	0.7621
					Lus10030127 [exp]	6.3	0.7615
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	6.7	0.8224
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	11.5	0.7459

Compare expression of checked genes

Lus10043169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.