Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26670 191 / 1e-61 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G55510 187 / 4e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G10110 54 / 3e-09 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 53 / 5e-09 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G24650 41 / 0.0002 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 40 / 0.0006 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032577 [exp] 332 / 2e-117 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10026848 [exp] 57 / 4e-10 AT3G10110 224 / 5e-76 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10020223 [exp] 56 / 1e-09 AT3G10110 229 / 8e-78 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032913 [exp] 42 / 0.0002 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360300 [exp] 204 / 8e-67 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 197 / 3e-64 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G281200 [exp] 54 / 4e-09 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.009G076400 [exp] 52 / 2e-08 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 42 / 0.0001 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.015G000600 [exp] 40 / 0.0008 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10043170 pacid=23167967 polypeptide=Lus10043170 locus=Lus10043170.g ID=Lus10043170.BGIv1.0 annot-version=v1.0 ATGGCGACAACGGCGGATTCCCCAAACCCTGATTCCGACCTCCCTGGTTCTAGTGAAAACCCTACCTCTGCTCCTCCCTCTACTCCTCCCTCCTCCGCCA TCATCCCATCCAGTCCTTCCGTCTGCCTATTTGGGTTCGCTACCGAGTCCGCCGGTGGCGCATTGATAGGCTCCATCTTCGGCTTCGGTTCTGGTTTAGT TCGGAAGAAAGGCTTTAAGGGATCTCTTACAGAGGCCGGTTCTCATGCAAAGACATTTGCTCTCCTGTCTGGAGTACACAGCTTGGTTATATGCTTTTTG AGGAGGCTACGAGGGAAGGATGATGTCATCAATGCTGGTGTGGCTGGATGTTGTACTGGTCTTGCCTTAAGCTTCCCAGGTACACCTCAGGCTCTGTTGC AGAACTGTGTGACGTTTGGAGCATTCTCATTTATCACTGAAGGGCTCAACAAGCGGCAGACAGCACTTGCAGCTCAACCATTTTCCGGAAACCATCGTGC ACCTCGTTCCCTTGCCCTACCTCTCGCGGTTCCACTTCCAGAGGAACTAAACCAGGCCTTCTCTTTCTTCCGTGATTCCTTGAGGAAACTGAATCACCAG AAATCGTCGCCTTGGAGTGCATGA
AA sequence Show only first row Show all	>Lus10043170 pacid=23167967 polypeptide=Lus10043170 locus=Lus10043170.g ID=Lus10043170.BGIv1.0 annot-version=v1.0 MATTADSPNPDSDLPGSSENPTSAPPSTPPSSAIIPSSPSVCLFGFATESAGGALIGSIFGFGSGLVRKKGFKGSLTEAGSHAKTFALLSGVHSLVICFL RRLRGKDDVINAGVAGCCTGLALSFPGTPQALLQNCVTFGAFSFITEGLNKRQTALAAQPFSGNHRAPRSLALPLAVPLPEELNQAFSFFRDSLRKLNHQ KSSPWSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26670			Mitochondrial import inner mem...		Lus10043170 [exp]	0	1
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	1.4	0.9349
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10025329 [exp]	2.4	0.9216
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	2.4	0.9504
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	11.1	0.9330
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10027529 [exp]	11.7	0.8808
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	14.8	0.9247
AT5G52370			unknown protein		Lus10040713 [exp]	15.0	0.9196
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10027873 [exp]	17.7	0.8982
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	18.0	0.9271
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	18.5	0.9178

Compare expression of checked genes

Lus10043170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.