Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 637 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 628 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 605 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 574 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 537 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 510 / 4e-173 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 501 / 2e-169 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT5G08030 69 / 2e-12 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032576 [exp] 1116 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 875 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 874 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 828 / 0 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10031604 [exp] 827 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 382 / 3e-123 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040036 [exp] 339 / 2e-108 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 306 / 5e-94 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10019606 [exp] 274 / 4e-83 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 713 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 713 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 488 / 2e-164 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 477 / 3e-160 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 66 / 2e-11 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10043171 pacid=23168157 polypeptide=Lus10043171 locus=Lus10043171.g ID=Lus10043171.BGIv1.0 annot-version=v1.0 ATGGGTTACAGGTTGACGCAGGGAGTCTTTTCTCGCAGTCCAAGTTTTGACACCAATTTGTTCCCTATCCTTACTGTTGATGATGTTGCCGGGCTAAAGC CAGCTGGCCTTTGGTTGAATGTTCAGCATGACGCGTTCTATGCCCAGCACAATTTAAGTATGAGAAACTATGTTCTTGCTGCATCAAGGAGATTGGTTGT TAACTACATCTCATCTCCTGAAGTAGGGTTCTTGAGAAGCATATCAACCAGGTTCAACCCAAAAATCACCAAGCTATTCTTCCGGTTTAATGGGAAAACT GATATTGAGCCTTCCACGAACCAGACTTATGGTTCTCTATTATCAAATTTAACATTTATTAGAAGCTTTGCCGCTGGAATTGTTGTCCCTAAGACTTACA TATGGCCCTTGGATGCAAGTAACTATTTGCAAGCAAGTACTTCCGTTGTTTTGGATGCTCATAAAGCTGGGCTTGAAGTCCTGGCCTCGGATTTTAACAA TGACGATGCTCTGAGTTATAATTACAGTTACGACCCTGTATCGGAGTATCTGCAATACGTAGACAATGGGAAGTTCTCTGTTGATGGCGTGCTGTCTGAC TTTCCAATAACTCCATCTGAAGCATTTGTAAACTTTTTGGTCATCTCCAAAGATGGCGCCAGTGGAGACTACCCCGGGTGCACAGACATTGCATACCAAA ATGCTATCTTGGATGGTGCAAATGTTATTGATTGTACAGTCCAGATGTCTCAAGATGGAATACCATTTTGCCAAAGCTCTATTAATCTTATTGACACTAC AAGAGCTGCTGAGACATTGAACAACTTTTCGACAAGTGTTCCGGAGCTCAAAGGCAATGGAATATATACCTTTAGCTTGCCTTGGAGCCAGATTCAGACC TTGACTCCGGTCATATCCAATCCATATCCAACCTATTCGTTGGTGAGGAACCCAAAGATGAGAAATGCTGGAAAGTTTGTTTCCCTCTCTGACTTCCTAG CTTTGGCAAAGAACGCCGGTTCTCTTTCTGGTGTTCTAATAAGAGTTGAGTCACTCATTTCCTCCATTTACCAGAATGCAGCCTATCTCATGGAGAAGCA AGGGCTGGCTGTACTTGACGCGATTGAGACCGAGTTGAGTAAAGCTGGTTACGATAATCAGACAGCTCTGAAAGTCATGATTCAGTCCACCAACAGCTCA GTTCTAACGAAGCTGAATGAGAAAGAAAACAAGTACGAGTTCGTCTACGAGGTCGACGAAACTATAGGAGGGGCTGATAAATCTGCCATTCTAGATATCA AGGATTTTGCTCATTCTGTGGTCATCAGCAAGTCGTCCGTGTTTCCCGTGAACAATGCTTTTCTTACCGGCATGACGAATGTTGTGTCTGAGCTACAGTC AGCTGGTTTTCCCGTGTACGTGCAAACCTTCAGCAATGAGTTTGCATCTCAGCCATGGGACTCCTTTGGTGATGCGACCGTGGAACTCAACACCTTCATC TCCGGAACCAACATTACTGGTGTCGTTACAGACTTCCCCAGGACATCTGCCAGATACAAAAAGAACAGATGTCTCAATCTGGGGAACAAGGCTCCAGCTT ACATGGCCCCGGTTCAGGCAGGGAGTCTGCTTCAGATTATCCAACCTCAATCGCTGCCACCAGCTCAGGCTCCGAGCCCGCCTCTAACCGAGAACGACGT CGCAGAGGCATCGCTACCAGCAGTTGGAAACAAACCTACGACTGCAAATGATGGTGGAGCTACACCAACAAGTCCAGGGAAGAATGGACAGCCAAAGGTA GCAGCAGCAACAGGGTTCGTGCTTATTTCGTGGTTGACTGTGCTTTTCGCGACGCTTTGGCTGCTTTGA
AA sequence Show only first row Show all	>Lus10043171 pacid=23168157 polypeptide=Lus10043171 locus=Lus10043171.g ID=Lus10043171.BGIv1.0 annot-version=v1.0 MGYRLTQGVFSRSPSFDTNLFPILTVDDVAGLKPAGLWLNVQHDAFYAQHNLSMRNYVLAASRRLVVNYISSPEVGFLRSISTRFNPKITKLFFRFNGKT DIEPSTNQTYGSLLSNLTFIRSFAAGIVVPKTYIWPLDASNYLQASTSVVLDAHKAGLEVLASDFNNDDALSYNYSYDPVSEYLQYVDNGKFSVDGVLSD FPITPSEAFVNFLVISKDGASGDYPGCTDIAYQNAILDGANVIDCTVQMSQDGIPFCQSSINLIDTTRAAETLNNFSTSVPELKGNGIYTFSLPWSQIQT LTPVISNPYPTYSLVRNPKMRNAGKFVSLSDFLALAKNAGSLSGVLIRVESLISSIYQNAAYLMEKQGLAVLDAIETELSKAGYDNQTALKVMIQSTNSS VLTKLNEKENKYEFVYEVDETIGGADKSAILDIKDFAHSVVISKSSVFPVNNAFLTGMTNVVSELQSAGFPVYVQTFSNEFASQPWDSFGDATVELNTFI SGTNITGVVTDFPRTSARYKKNRCLNLGNKAPAYMAPVQAGSLLQIIQPQSLPPAQAPSPPLTENDVAEASLPAVGNKPTTANDGGATPTSPGKNGQPKV AAATGFVLISWLTVLFATLWLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	0	1
AT4G20020			unknown protein		Lus10037713 [exp]	2.2	0.8234
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	3.2	0.8660
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	3.2	0.7772
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	4.5	0.8580
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	5.2	0.8560
					Lus10001343 [exp]	6.9	0.8407
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	7.7	0.8199
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	10.2	0.8054
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10005334 [exp]	10.4	0.7806
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	12.5	0.7381

Compare expression of checked genes

Lus10043171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.