Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55310 880 / 0 TOP1alpha, TOP1BETA DNA topoisomerase 1 beta (.1) AT5G55300 874 / 0 MGO1, TOP1BETA, TOP1ALPHA TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) AT4G26701 127 / 4e-35 DNA binding;DNA topoisomerase type Is (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032571 [exp] 1264 / 0 AT5G55310 971 / 0.0 DNA topoisomerase 1 beta (.1) Lus10043175 [exp] 1251 / 0 AT5G55300 971 / 0.0 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) Lus10032572 [exp] 681 / 0 AT5G55310 580 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032573 [exp] 409 / 2e-137 AT5G55300 213 / 3e-61 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359700 [exp] 995 / 0 AT5G55310 934 / 0.0 DNA topoisomerase 1 beta (.1) Potri.011G092700 [exp] 995 / 0 AT5G55310 912 / 0.0 DNA topoisomerase 1 beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0382 [flax] [poplar] DNA-mend PF01028 [flax] [poplar] Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core CL0382 [flax] [poplar] PF02919 [flax] [poplar] Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment
Representative CDS sequence Show only first row Show all	>Lus10043172 pacid=23167928 polypeptide=Lus10043172 locus=Lus10043172.g ID=Lus10043172.BGIv1.0 annot-version=v1.0 ATGAAAACATCTCCATTGCGATCTCCTGTAACAAATCCAAAGTCGTCAATTTCTTTGGATAGCAAGCAGGGACTTAAGTACATTGCTTCTTCTGCTGTTA GGACGGAGACTAAGTCTGTAAAATCAGAGAACAAGTCTCAGATTGGTGATGACGATTCCGAGGATGATAAGTCCTTGAGTTACAGAATGAAGGGGTCTGG CAACAATGCTCAGAAAGGAGTTGGTGCTCCCTCTCAGGTGAAACAGGAAGGTTCTGATGATGATGACGATTTACCTTTGGCTTCAAGAATTTCAACAAAA CCTAATCAATCTAGTGAAAAAAAACTCTTACCATCAAGATCCCAGCAAGATGGTTCAACGTCAAATGAGAAGAAGGTCCATCCTCTGCCGAACAAGAGAC CTACATCAAAACCAACAAAAGTGGTCTTTTCTTCATTAAAAAATACCAATATTAAGAGCAAGAAACAAGTCAAAACTTCCAAGTATTCCACGTCAACAAA ATTCCAGCCGAGCTCCAATGATGGCCAGAAAAAATTGACCACCTTGGTTCATAACGGTGTAATATTTCCTCAACCATATCAGCCTCACGGGGTTAAGATG CGTTACAAGGGGAAACAAGTTGATCTGACTCCTGAACAAGAAGAGGTTGCTACCATGTTTGCTGTTATGAAGGATACTGACTACATGCAAAAACCGAAGT TCCTCGAGAACTTCTGGAATGATTGGCGTAAGATACTGGGGAAGAACCATGTCATTCAGAAGTTGGATGACTGTGATTTTACACCAATATATGACTGGCA TCAGCAAGAGAAGGAGAAGAAAAAACAAATGAGTACAGAAGTCGGGAACTTCAGAGTTGAACCTCCGGGTTTGTTTCGAGGCCGTGGAGAGCATCCAAAG ATGGGAAAGCTGAAGAGGCGTATTCGTCCTAAGGATATCACCATAAACATCGGTAAAGACGCTCCTATTCCAGAATGTCCGGTTGATGGTGAAAGCTGGA ATGAAATAAAGCATGATAATACTGTTACATGGTTGGCTTTCTGGAATGATCCTATCAACCCCAAAGAATTCAAGTATGTGTTCTTGGCAGCCAGCAGTTC ATTAAAAGGGCAAAGTGATAAAGAGAAATATGAAAAAGCAAGGAAGCTGAAGGACTACATACGCAGTATAAGGACAGCTTACACAAGGGATTTCACTAGT AAAGATGTCATGAAACGGCAAATAGCAGTTGCTACGTATCTTATTGATAAACTAGCTCTTAGGGCGGGTAATGAGAAGGATGATGATGAAGCTGATACAG TCGGTTGCTGTACCTTAAAAGTATCAAATGTGGAGTGCGTCCCTCCCAATATGCTAAAGTTTGACTTTCTTGGTAAAGATTCAATTCGTTATGAGAACAC AGTTGAGGTCGAGCTTCCTGTGTTCAAAGCAATTGGACAATTCCAAACTGGCAAAAAAGATGCTGATCTCCTTTTTGACCAGCTGGATACGTCTAAACTG AACGCCCACTTGAAAGAACTAATGCCTGGGCTTACAGCAAAGGTTTTTCGTACCTACAATGCTTCAATCACATTGGATGAGCAATTATATGAAGAAACAG AAGATGGTGATGTTGCAGAGAAAGTTGTCGTGTATCAAAAGGCAAACAAACAGGTTGCAATCATCTGTAATCATCAGCGTACCGTTTCCAAAAGTCACGA TTCTCAAATGATGAGGTTGACAGAGAGGATTGACACTGCTAAGGAAGAAGTGAAAGAGCTAAAAATTGATTTGGAGAGGGCTAAAAAGGGGAAGCCACCA TTGAAGGGTGCAGATGGAAAGCAAAAGAGGAACTTGAATCCTGAAGCGATAGAGAAAAAAATAGCATCAGCGAAGCAAAAGATCGAGAAGTACGAAATGG ACATGAAGTCGAAGGAGGATCTGAAAACAGTAGCACTGGGGACATCGAAGATAAACTATCTGGATCCTAGGATCACAGTTGCATGGTGCAAGAGGCACGA AGTTCCAATTGAGAAGATATTCAACAAATCACTTCTAGCAAAGTTTGCATGGGCAATGGACGTTGATCCCCAGTTCAGATTCTGA
AA sequence Show only first row Show all	>Lus10043172 pacid=23167928 polypeptide=Lus10043172 locus=Lus10043172.g ID=Lus10043172.BGIv1.0 annot-version=v1.0 MKTSPLRSPVTNPKSSISLDSKQGLKYIASSAVRTETKSVKSENKSQIGDDDSEDDKSLSYRMKGSGNNAQKGVGAPSQVKQEGSDDDDDLPLASRISTK PNQSSEKKLLPSRSQQDGSTSNEKKVHPLPNKRPTSKPTKVVFSSLKNTNIKSKKQVKTSKYSTSTKFQPSSNDGQKKLTTLVHNGVIFPQPYQPHGVKM RYKGKQVDLTPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKILGKNHVIQKLDDCDFTPIYDWHQQEKEKKKQMSTEVGNFRVEPPGLFRGRGEHPK MGKLKRRIRPKDITINIGKDAPIPECPVDGESWNEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIRSIRTAYTRDFTS KDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVSNVECVPPNMLKFDFLGKDSIRYENTVEVELPVFKAIGQFQTGKKDADLLFDQLDTSKL NAHLKELMPGLTAKVFRTYNASITLDEQLYEETEDGDVAEKVVVYQKANKQVAIICNHQRTVSKSHDSQMMRLTERIDTAKEEVKELKIDLERAKKGKPP LKGADGKQKRNLNPEAIEKKIASAKQKIEKYEMDMKSKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPQFRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	0	1
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	3.0	0.8417
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	6.8	0.8477
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	6.9	0.8513
AT1G28100			unknown protein		Lus10002573 [exp]	7.4	0.8206
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	11.5	0.8316
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	13.6	0.7902
AT1G53200			unknown protein		Lus10030239 [exp]	15.9	0.8205
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	16.5	0.8202
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	17.0	0.7993
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	24.6	0.7419

Compare expression of checked genes

Lus10043172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.