Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032677 [exp] 208 / 3e-67 ND / Lus10018809 [exp] 98 / 2e-25 ND / Lus10033089 [exp] 101 / 7e-24 ND / Lus10012401 [exp] 93 / 2e-23 ND / Lus10009741 [exp] 94 / 1e-22 ND / Lus10000886 [exp] 87 / 4e-20 ND / Lus10002224 [exp] 83 / 1e-18 ND / Lus10003639 [exp] 78 / 1e-16 ND / Lus10001380 [exp] 72 / 1e-15 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043174 pacid=23168360 polypeptide=Lus10043174 locus=Lus10043174.g ID=Lus10043174.BGIv1.0 annot-version=v1.0 ATGAAGCCACCTAAGGTCGATACTTCAGTCAAGGTTGTACCAAATCAGAGTCGAGGAAAACATCCACTACCGGACCAGTCTCGTGGTCATGTTAGTGATC AAACAGTGGAAGAAATAGCTGTAGAGGTTGTGGTTGAAGCAGAAACAATCATTGATTCAACACCAAGTACATATTTGGTTGTGTTTGGAGTAATGCCAAT CCAAGAAGAGGTGAGGCCTAAGAAGAAGAAGGTCCCTACATCGATTGCCTATGGCCGCAAGAAGGGACGGAAGAATTCAAGTATGCATTGGTATTACCTG ACCAAAACCCTCGAGAAGGACCTGACTGCTGACGAGAATAAGATCGTTATCGATATTCTGTCCGCTCCTGATAATTGGTGTTTTCCCCTGTCAGGGGGGA GTTTTAAGCACTTCTATGTGTTTGGACTAGATCTAGATCTAGTGCACAAAGAGAAATTCATTCTTAATAGCATGTCTTGCCTCAATGATTTTGAAGTAAA GAGTTACTACAAACCTACGGGAACGCGCCTGATGTTGTACGCAAGGCTAGTGCTTCTGGAGGTAGCTGAATTGGACATAGATGAGTTCACGTGGCATGTC CCTTCTATACCTCAACAGCCGGATACAAATAGTTGCGGGTGTATGTGTCGCAGTTCATGGATCATTATCATAGACCAGAACCAGGAGTGGAGCATTACAG CTGTGCTTCGAACCGATATACTGAAGTATTGTTGTCACATCGTTCTATCCAGTGCAAACCGATCATGTAGCCAAATAATGGACATGGCTATTCAATTCAA TGAGGAGATCAAGTTCCAAGGGAAAGTGGGGAAGTAA
AA sequence Show only first row Show all	>Lus10043174 pacid=23168360 polypeptide=Lus10043174 locus=Lus10043174.g ID=Lus10043174.BGIv1.0 annot-version=v1.0 MKPPKVDTSVKVVPNQSRGKHPLPDQSRGHVSDQTVEEIAVEVVVEAETIIDSTPSTYLVVFGVMPIQEEVRPKKKKVPTSIAYGRKKGRKNSSMHWYYL TKTLEKDLTADENKIVIDILSAPDNWCFPLSGGSFKHFYVFGLDLDLVHKEKFILNSMSCLNDFEVKSYYKPTGTRLMLYARLVLLEVAELDIDEFTWHV PSIPQQPDTNSCGCMCRSSWIIIIDQNQEWSITAVLRTDILKYCCHIVLSSANRSCSQIMDMAIQFNEEIKFQGKVGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043174 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	6.0	1.0000
					Lus10001326 [exp]	7.2	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	7.4	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	8.4	1.0000
					Lus10003843 [exp]	8.7	1.0000
					Lus10004351 [exp]	10.2	1.0000
					Lus10022996 [exp]	10.6	1.0000
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	12.4	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	13.0	1.0000
					Lus10016867 [exp]	13.7	1.0000

Compare expression of checked genes

Lus10043174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.