Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55300 931 / 0 MGO1, TOP1BETA, TOP1ALPHA TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) AT5G55310 918 / 0 TOP1alpha, TOP1BETA DNA topoisomerase 1 beta (.1) AT4G26701 124 / 1e-33 DNA binding;DNA topoisomerase type Is (.1) AT5G55290 42 / 8e-05 ATPase, V0 complex, subunit E (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032571 [exp] 1526 / 0 AT5G55310 971 / 0.0 DNA topoisomerase 1 beta (.1) Lus10043172 [exp] 1102 / 0 AT5G55310 880 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032572 [exp] 699 / 0 AT5G55310 580 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032573 [exp] 618 / 0 AT5G55300 213 / 3e-61 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) Lus10032570 [exp] 44 / 2e-05 AT5G55290 128 / 4e-41 ATPase, V0 complex, subunit E (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359700 [exp] 1137 / 0 AT5G55310 934 / 0.0 DNA topoisomerase 1 beta (.1) Potri.011G092700 [exp] 1068 / 0 AT5G55310 912 / 0.0 DNA topoisomerase 1 beta (.1) Potri.001G359600 [exp] 42 / 8e-05 AT5G55290 102 / 8e-31 ATPase, V0 complex, subunit E (.1.2) Potri.011G092600 [exp] 42 / 8e-05 AT5G55290 105 / 5e-32 ATPase, V0 complex, subunit E (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0382 [flax] [poplar] DNA-mend PF01028 [flax] [poplar] Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core CL0382 [flax] [poplar] PF02919 [flax] [poplar] Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment
Representative CDS sequence Show only first row Show all	>Lus10043175 pacid=23168391 polypeptide=Lus10043175 locus=Lus10043175.g ID=Lus10043175.BGIv1.0 annot-version=v1.0 ATGGCTGTTCAAACACCTGCCAGGCGCGTCATGGATGATATGGATTCTGAGGATGATGATAAGCCATTGGTTTTTAGAAGGAATGGTAGCTCCGCGGCTA GGCAAAGCCAAGTAAAGGCTGAAGTTAAGAGACTGCCGTCTTCGTCTCAAAATGTTAATGCCCAAAGCTCGAATGGGCAGAGGGATAAAGCCCCGGTTGC ATCTTCTAACTCCTCGCCAGTTAAATCTCCCATTGGGAGCCCTAGAGCATCAACTTCATCTATGAAAGCATCTCCATTGCGATCTCCTGTAACAAATCCA AAGTCGTCAATTTCTTTGGAGAGCAAGCAGGGACTTAAGCACAATGCTTCTTCTGCTATTAGGATGGAGACTAAGACTAAGTCTGTAAAATCTGAGAACA AGTCTCAAATTGATGATGAGGATTCTGAGGATGATAAGCCCTTGAGTTACAGAATGAAGGGATCTGGCAACAATGCTCAGAAAGGAGTCAGTGCTCCCTC TCAGGTGAAAAAGGAAGATTCTGATGATGATGACGATTTACCTTTGGCTTCAAGAATTTCAACAAAACCTAATCAATCTAATGAAAAAAAACCCTTACCA TCAAGATCTCAGCAAAATTGTTCAACGTCAAATGAGAAGAAGGTCAATCCTCTGCCGAACAAGAGACCTATGGTGGCGAGTAATAGAATGGATCAATTGT CGGCCAAAAAGCCAAAGCTTTCTACTCCATCTACCACCACGAAAGTCGAACCACGAGCATCTAAAGCAGAGGAGAGGGCGGATGATGACGATGATGTTCC GATCTCCCAGAGGATCAAGCAGCAAGCGATTGCAGAAAGAAAACAGTCATCTTCATCGAAAGCAACAAAAGTGGTCTCTTCTTCATTCAAAAAGCTGAAT ATTAAGAGCAAGACACAAGTTAAAACTTCCAAGTATTCCACGTCAACAAAATTCCAGCCGAGCTCCAATGATGGCCAGAAAAAATGGACCACCTTGGTTC ATAACGGTGTAATATTTCCTCCTCCATATCAGTCTCATGGGGTTAAGATGCGATACAAAGGGAAACAAGTTGATTTAACTCCTGAACAAGAAGAGGTTGC TACCATGTTTGCTGTGATGAAGGATACTGACTACATGCAAAAACCGAAGTTCCTCGAGAACTTCTGGAATGATTGGCGTAAGATACTGGGGAAGAACCAT GTCATACAGAAGCTGGATGACTGTGATTTTACACCAATATATGACTGGCATCAGGAAGAGAAGGAGAAGAAAAAACAAATGAGTACAGAAGAGAAGAAGG CAATCAAAGAAGAAAAACTGAAACAGGAAGAGAAATATATGTGGGCTATATTGGATGGTGTTAAAGAAAAGGTTGGGAACTTCAGAGTTGAACCTCCTGG TTTGTTTCGAGGCCGTGGAGAGCATCCAAAGATGGGAAAGCTGAAGAGGCGTATTTATCCGAAGGATATCACCATAAACATTGGTAAAGACGCTCCTATT CCAGAATGTCCAATTGAGGGTGAAAGCTGGAATGAAATAAAGCATGACAACACTGTTACATGGTTGGCTTTCTGGAATGATCCTATCAACCCCAGAGAAT TCAAGTATGTGTTCTTGGCAGCCAGCAGTTCATTAAAAGGGCAAAGTGATAAAGAGAAATATGAAAAAGCACGGAAGCTGAAGGACTACATACGCAGTAT AAGGACCGCTTACACAAGGGATTTCACGAGTAAAGATGTCACAAAACGGCAAATAGCAGTTGCTACGTATCTTATCGATAAGCTAGCTCTTAGGGCGGGT AATGAGAAGGATGATGATGAAGCTGATACGGTTGGTTGCTGTACATTAAAAGTATCAAATGTGGAGTGCGTCCCTCCCAATATGCTAAAGTTTGACTTTC TTGGTAAAGATTCAATTCGTTATGAGAACACAGTTGAGGTCGAACTTCCCGTGTTCAAAGCAATTGGACAATTCCAAACTGGCAAAAAAGATGCTGATCT CCTTTTTGACCAGCTGGATACGTCTAAACTGAACGCCCACTTGAAAGAACTAATGCCTGGGCTTACAGCAAAGGTTTTTCGTACCTACAATGCTTCAATC ACATTGGATGAGCAATTATATGAAGAAACAGAAGATGGTGATGTTGCAGAGAAAGTTGTCGTGTATCAAAAGGCAAACAAGCAGGTTGCAATCATCTGTA ATCATCAGCGTACCGTTTCCAAAAGTCATGATTCTCAAATGATGAGGTTGACTGAGAGGATCGATGCTGCTAAGGAAGAAATGAAAGAGCTAAAAATTGA TTTGGAGAGGGCTAAAAAGGGGAAGCCACCATTGAAGGGTGCAGATGGAAAGCAAAAGAGGAACTTGAATCCTGAAGCGATAGAGAAAAAAATAGCATCA GCGAAGCAAAAGATCGAGAAGTACGAAATGGACATGAAGTCGAAGGAGGATCTGAAAACAGTAGCACTGGGGACATCGAAGATAAACTATCTGGATCCTA GGATCACAGTTGCATGGTGCAAGAGGCACGAAGTTCCAATTGAGAAGATATTCAACAAATCACTTCTAGCAAAGTTTGCATGGGCAATGGACGTTGATCC CCAGCCCAACTTTGTCAATCAGTCGAACCATCGTCAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAAATTTAGATCTTGCTACTGCGAGAGAACCAAAGCT CCACCACAGATCAACAACCATCAGCTTCTCCCAATTCTCAGAAATCGCGATCGGATTCACAAGCACAACGAGATGGGGTTTCTGGTGACGACGCTGGTCT TTGTAGTGGTCGGAATAATCGCCTCGCTCTGCGCACGAATCTGCTGTAACAGAGGACCCTCCACCAATTTGTATGCTTCATCTCTCTTTTGA
AA sequence Show only first row Show all	>Lus10043175 pacid=23168391 polypeptide=Lus10043175 locus=Lus10043175.g ID=Lus10043175.BGIv1.0 annot-version=v1.0 MAVQTPARRVMDDMDSEDDDKPLVFRRNGSSAARQSQVKAEVKRLPSSSQNVNAQSSNGQRDKAPVASSNSSPVKSPIGSPRASTSSMKASPLRSPVTNP KSSISLESKQGLKHNASSAIRMETKTKSVKSENKSQIDDEDSEDDKPLSYRMKGSGNNAQKGVSAPSQVKKEDSDDDDDLPLASRISTKPNQSNEKKPLP SRSQQNCSTSNEKKVNPLPNKRPMVASNRMDQLSAKKPKLSTPSTTTKVEPRASKAEERADDDDDVPISQRIKQQAIAERKQSSSSKATKVVSSSFKKLN IKSKTQVKTSKYSTSTKFQPSSNDGQKKWTTLVHNGVIFPPPYQSHGVKMRYKGKQVDLTPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKILGKNH VIQKLDDCDFTPIYDWHQEEKEKKKQMSTEEKKAIKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIYPKDITINIGKDAPI PECPIEGESWNEIKHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARKLKDYIRSIRTAYTRDFTSKDVTKRQIAVATYLIDKLALRAG NEKDDDEADTVGCCTLKVSNVECVPPNMLKFDFLGKDSIRYENTVEVELPVFKAIGQFQTGKKDADLLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASI TLDEQLYEETEDGDVAEKVVVYQKANKQVAIICNHQRTVSKSHDSQMMRLTERIDAAKEEMKELKIDLERAKKGKPPLKGADGKQKRNLNPEAIEKKIAS AKQKIEKYEMDMKSKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPQPNFVNQSNHRQKKKKKKKKSKFRSCYCERTKA PPQINNHQLLPILRNRDRIHKHNEMGFLVTTLVFVVVGIIASLCARICCNRGPSTNLYASSLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	0	1
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	2.0	0.9275
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	2.2	0.9411
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	3.9	0.9263
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	5.8	0.9023
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	6.0	0.9199
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	6.6	0.9088
AT5G43680			unknown protein		Lus10040152 [exp]	8.2	0.8796
AT5G18420			unknown protein		Lus10008554 [exp]	10.2	0.9150
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	11.3	0.9249
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	15.1	0.8771

Compare expression of checked genes

Lus10043175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.