Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55250 532 / 0 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2) AT5G56300 246 / 2e-78 GAMT2 gibberellic acid methyltransferase 2 (.1) AT4G26420 218 / 2e-67 GAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G36470 205 / 1e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 200 / 9e-61 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 199 / 2e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38780 198 / 5e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 197 / 1e-59 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 187 / 4e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 188 / 5e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032569 [exp] 538 / 0 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2) Lus10025993 [exp] 191 / 3e-56 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 182 / 1e-53 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 182 / 1e-53 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 173 / 8e-50 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 169 / 9e-49 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 172 / 4e-48 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 167 / 8e-48 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021802 [exp] 162 / 7e-47 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359000 [exp] 553 / 0 AT5G55250 585 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Potri.010G104800 [exp] 228 / 2e-71 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 219 / 3e-68 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016112 [exp] 219 / 4e-68 AT1G68040 319 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 216 / 6e-67 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021400 [exp] 216 / 6e-67 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 216 / 1e-66 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022002 [exp] 213 / 8e-66 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122950 [exp] 213 / 8e-66 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 208 / 8e-64 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10043177 pacid=23168219 polypeptide=Lus10043177 locus=Lus10043177.g ID=Lus10043177.BGIv1.0 annot-version=v1.0 ATGGCTGGGGAAAATATAGCAGTCGTAATTCCTACCGGCGCCAACAACAACGTCAACACCATGAAGCTTGAGAAATTGCTTTGCATGAAAGGTGGCCAGG GTGACTCCAGCTATGCCAACAACTCCAAAGCTCAGGCGTTGCATGCAAGATCAGTAGCACACATTCTGGAGGAAACCCTGGACAAGATCCAGCTCCAACC CCCTCCACACAACTCCAAATTATTCCGGGTGGTTGATTTGGGATGTTCTTCAGGAAGCAACACCATCTCCACCGTCGAGTCCATCTTGAAACACATGATC AAGCGGTTTCAGGCGGCCGGGCTGGACCTGCCGGAGTTCGCCGCGTTTTTCTCCGACCTCCCGAGCAACGACTTCAACACTCTGTTCAAACTGCTCCCGA CCACAAACGAAGACGAGGGATGCGGTGTTGAGTATTTCGCGGCGGGAGTTCCGGGGTCGTTTCACAAGCGGCTTTTCCCGACAAACTCCGTTGATTTCTT TCACTCAGCTTTCTCCCTTCACTGGCTCTCTCAGGTGCCAGAGACAGTGATGGAGAAGAGATCAAGCGCATACAACAGAGGGAAGGTGTTCATCCATGGA GCTAAGGAGTCGACGGTTTCTGCATACAAACATCAATTCCAGACTGACTTGGGAGCTTTCCTCATAGCTAGATCTCTCGAGTTGACCACTGGCGGGACCA TGTTCGTCGTCTGCTTGGGCCGGACCTCGCCCGACCCGACCGACCAAGGTGGTGCCGGGCTCCTGTTCGGGACCCACTTTCAGGATGCATGGAACGACCT TGTCCACCAGGGAATGATATGTAGCGAGAAGCGTGACGAGTTCAACATTCCGATATACGCACCAAGCCTGCAAGAGTTCAAGCAAGTGGTAGAAGCCAAT GGTTCCTTTGTGATTAACAAGCTTGAGGTCTGCAAAGGGGGAAGCCCTCTGGTAGTCAGCAAGCCTGACGATGCGTCGGAGATCGGTCGGGCATTGGCCA GCAGCTGCCGGAGTGTGGCCGGAGTCCTTGTGGACGCCCACATTGGTGAAGAGTTGAGTGAGCAACTGTTTCAAAACGTGGAACGGCGAGCCACTTGCCA TGCTAGAGAGTTACTCGACGAGCTCCAATTCTACCATGTTGCTGCCTCCCTTTCTCTTCTTTAG
AA sequence Show only first row Show all	>Lus10043177 pacid=23168219 polypeptide=Lus10043177 locus=Lus10043177.g ID=Lus10043177.BGIv1.0 annot-version=v1.0 MAGENIAVVIPTGANNNVNTMKLEKLLCMKGGQGDSSYANNSKAQALHARSVAHILEETLDKIQLQPPPHNSKLFRVVDLGCSSGSNTISTVESILKHMI KRFQAAGLDLPEFAAFFSDLPSNDFNTLFKLLPTTNEDEGCGVEYFAAGVPGSFHKRLFPTNSVDFFHSAFSLHWLSQVPETVMEKRSSAYNRGKVFIHG AKESTVSAYKHQFQTDLGAFLIARSLELTTGGTMFVVCLGRTSPDPTDQGGAGLLFGTHFQDAWNDLVHQGMICSEKRDEFNIPIYAPSLQEFKQVVEAN GSFVINKLEVCKGGSPLVVSKPDDASEIGRALASSCRSVAGVLVDAHIGEELSEQLFQNVERRATCHARELLDELQFYHVAASLSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10043177 [exp]	0	1
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	2.8	0.8986
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	10.4	0.8768
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	11.0	0.8735
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	11.3	0.8925
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	16.8	0.9025
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	17.5	0.8699
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	21.8	0.8979
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10004677 [exp]	36.1	0.8804
					Lus10032104 [exp]	52.7	0.8413
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10034217 [exp]	52.9	0.8531

Compare expression of checked genes

Lus10043177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.