Plant FIBer expression Database

Lus10043179 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22320 57 / 2e-10 unknown protein
AT5G55210 56 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032566
[exp]
104 / 2e-28 AT4G22320 106 / 3e-28 unknown protein
Lus10021308
[exp]
53 / 7e-09 AT4G22320 131 / 8e-38 unknown protein
Lus10016987
[exp]
50 / 8e-08 AT4G22320 130 / 2e-37 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G356400
[exp]
82 / 1e-19 AT5G55210 48 / 6e-07 unknown protein
Potri.011G023200
[exp]
56 / 5e-10 AT4G22320 108 / 6e-29 unknown protein
Potri.004G001500
[exp]
56 / 6e-10 AT4G22320 102 / 9e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10043179 pacid=23168126 polypeptide=Lus10043179 locus=Lus10043179.g ID=Lus10043179.BGIv1.0 annot-version=v1.0
ATGGAAGGCGTCGGCTCTCGCATCGGCCGCGCCTCTTCTCGCTACGGCCTGTCGGCTACCGCGAACGTGTTCAACGGTCCGGTTAGGAAGTGGAGGAAGA
AATGGGTCTACGTTCCTCCACCGCCGACCAATAACCAGAGCTCGAACTCACATTCAAACGGCCACCGCCACGGCGGAGGAAGAAGTACCAACATCAGCAC
CACGACGAGCAACGGCAGCGACAACGGCTCTCGCCTCTTACTCTGTAGGTGGACCCCTCTCGCCGAAGGCGGCGAAGAAGGAGACGGTTCTTCCGCCGCA
GACGAACAACCTCCCAAAAGGAGGTACCGTTACACTCCTGAGACTGGTGGTACACTGGACCTGGGACTGGGACTGAAAGGGCAAAGCAGCAAGGGCGAGT
CCCCAAGCCAGCAGGAGGAGGAACCACCGAAGGAGAAGGCAAACCCAGGAAGGGTATGGGCATTTGGTCAAGTCCCCTAG
AA sequence
>Lus10043179 pacid=23168126 polypeptide=Lus10043179 locus=Lus10043179.g ID=Lus10043179.BGIv1.0 annot-version=v1.0
MEGVGSRIGRASSRYGLSATANVFNGPVRKWRKKWVYVPPPPTNNQSSNSHSNGHRHGGGRSTNISTTTSNGSDNGSRLLLCRWTPLAEGGEEGDGSSAA
DEQPPKRRYRYTPETGGTLDLGLGLKGQSSKGESPSQQEEEPPKEKANPGRVWAFGQVP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G22320 unknown protein Lus10043179
[exp]
0 1
AT1G20580 Small nuclear ribonucleoprotei... Lus10012263
[exp]
3.7 0.8814
AT5G59970 Histone superfamily protein (.... Lus10041919
[exp]
10.8 0.9090
AT3G45400 exostosin family protein (.1) Lus10005684
[exp]
15.2 0.8554
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Lus10012272
[exp]
19.0 0.8614
AT5G02560 HTA12 histone H2A 12 (.1.2) Lus10005892
[exp]
19.8 0.9056
AT5G39050 PMAT1 phenolic glucoside malonyltran... Lus10035802
[exp]
21.1 0.8086
AT5G41685 Mitochondrial outer membrane t... Lus10007843
[exp]
21.1 0.9020
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Lus10043077
[exp]
22.1 0.8519
AT5G02560 HTA12 histone H2A 12 (.1.2) Lus10040853
[exp]
27.0 0.8965
AT3G27360 Histone superfamily protein (.... Lus10031252
[exp]
30.3 0.8698

Lus10043179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.