Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26780 253 / 2e-82 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 231 / 3e-74 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) AT5G17710 60 / 5e-10 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 49 / 3e-06 Co-chaperone GrpE family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032565 [exp] 441 / 3e-156 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10010247 [exp] 285 / 7e-96 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) Lus10000783 [exp] 290 / 7e-94 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10029654 [exp] 56 / 1e-08 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 55 / 4e-08 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 49 / 2e-06 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 49 / 4e-06 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 49 / 4e-06 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065800 [exp] 288 / 5e-96 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 282 / 1e-93 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.013G067900 [exp] 59 / 1e-09 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.002G090000 [exp] 54 / 8e-08 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 52 / 3e-07 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10043180 pacid=23168202 polypeptide=Lus10043180 locus=Lus10043180.g ID=Lus10043180.BGIv1.0 annot-version=v1.0 ATGTTGTCGTCATCTAGGGTTTTGTCGCGAACCTCATGGATCTCCGGCGTCCGACGCCCCCTACTTCTTCTCTCCTCTGCCTCCTCCAAACACCAGGACC ATTTGGTTCCGGCAATCTGTAATGGTGTTCATAACCCCGACCATGTGAGTAGCATACCGGAGAACAGAAAACTTCCTTTCGTCTCTGTATCCAAGTTTCA TCATCCAGCCCACAGCTCTTTTCTCTTTCAAAGCTTTGGCTTTGCTTCATCGGCGTCTTCTGGGCAAGCACAGAAGGAAGAGGGTGCCACAGAGAGAAAT GGGCAAGGGGAAACAGATGGAGATGTCGAGTCTGGTGGTCCTTCACAAGATTCGGCCTCTAGCGAGACCAAAGAAGCAGGTTTTGATTCTGAATCTCAAG CAACTGAATCTCAGCCTCCTAGAAGAAGGAGAAGGGGTGCCAAACAAACTGCATTTGCGGAGGATGATGCTGCTGATCTTTCAAGGGATGACTTGTTGAA GCTTGTGGTTGAGAAGGATGAGCTGCTCAAATCAAAGCAGGAAGAGTTTGAGATGATGAAGGATAAATTTCTTCGCAGCTTAGCAGAAAATGAGAATGTC ATGGAAAGAACTAAACGTGAAGCAGAGAATTCCAAAAAATTCGCCATTCAGAATTTTGCAAAAGGTCTGTTGGATGTTGGGGACAATTTGGAAAGGGCTT CTTCGGTTTTCAAAGAGAGTTTTGCCAAACTCGACACGTCTAAAGACAGTACCGGAGTAGTGCAACTTGTGAAGTCGCTTTCGGAAGGAGTTGATATGAC TGAGAAACAACTCGGGGAGGTGTTTAAGAAGTTTGGTTTGGAAAAATTCGACCCAATAAATGAACCTTTTGACCCGCATAGGCATAATGCTGTATACCAA GTACCTGATGCTTCTAAACCTCCAGGGACAGTTGCTCAAGTTCTCAAGGCAGGGTATATGCTTCATGAGCGGGTAGTTCGACCAGCGGAAGTTGGTGTCA CTAGAGGAGTTGAAGATGAGTAA
AA sequence Show only first row Show all	>Lus10043180 pacid=23168202 polypeptide=Lus10043180 locus=Lus10043180.g ID=Lus10043180.BGIv1.0 annot-version=v1.0 MLSSSRVLSRTSWISGVRRPLLLLSSASSKHQDHLVPAICNGVHNPDHVSSIPENRKLPFVSVSKFHHPAHSSFLFQSFGFASSASSGQAQKEEGATERN GQGETDGDVESGGPSQDSASSETKEAGFDSESQATESQPPRRRRRGAKQTAFAEDDAADLSRDDLLKLVVEKDELLKSKQEEFEMMKDKFLRSLAENENV MERTKREAENSKKFAIQNFAKGLLDVGDNLERASSVFKESFAKLDTSKDSTGVVQLVKSLSEGVDMTEKQLGEVFKKFGLEKFDPINEPFDPHRHNAVYQ VPDASKPPGTVAQVLKAGYMLHERVVRPAEVGVTRGVEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	0	1
AT3G58900			F-box/RNI-like superfamily pro...		Lus10035564 [exp]	1.0	0.8483
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	1.4	0.8082
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10026849 [exp]	3.5	0.8058
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	6.7	0.7436
AT2G21290			unknown protein		Lus10018053 [exp]	10.4	0.7651
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	10.5	0.7616
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10004663 [exp]	11.6	0.7167
AT1G02020			nitroreductase family protein ...		Lus10030289 [exp]	13.6	0.7643
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	16.3	0.7685
AT5G25500			unknown protein		Lus10002031 [exp]	17.8	0.7744

Compare expression of checked genes

Lus10043180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.