Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20290 886 / 0 ATEHD1 EPS15 homology domain 1 (.1.2) AT4G05520 825 / 0 ATEHD2 EPS15 homology domain 2 (.1.2) AT1G21630 85 / 5e-17 Calcium-binding EF hand family protein (.1.2) AT1G20760 73 / 3e-13 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032563 [exp] 1026 / 0 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2) Lus10035983 [exp] 80 / 2e-15 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10016689 [exp] 80 / 2e-15 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10016028 [exp] 79 / 4e-15 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10012248 [exp] 78 / 8e-15 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356300 [exp] 903 / 0 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.011G022300 [exp] 820 / 0 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.002G008600 [exp] 82 / 5e-16 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 81 / 7e-16 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 79 / 6e-15 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 79 / 6e-15 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Lus10043181 pacid=23168001 polypeptide=Lus10043181 locus=Lus10043181.g ID=Lus10043181.BGIv1.0 annot-version=v1.0 ATGGAGATTTCTCCCTCTCCAATCGGTTCCTGCAACAAAGAGTTCCAGAAGATCTACCAGGAGTGGTTCAGCTACGCCGATGCAGATGGAGATGGTAGAA TCACTGGTAATGATGCTATAAAATTCTTCGGCATGTCCAATTTACCTCGCCCGGATCTTAAACAGGTGTGGGCTATGGCTGACACCAAGAGGCAAGGATA CCTTGGCTTCAAAGAATTCGTAGCGTCTATGCAGTTGGTTTCCTTGGCACAATCTGGGAAGGAGATATCAAATGATATTATTCACAGCGATACTGTTGAT TTTGAGAATCTTCCTCCACCCATGATGGAGGGTTTAGCAGAACTTTTGGCGAAGCAAAAGAAGTCTTCAAGATTAAGTGATGGTGATGCAAATGGTAGCC CTCCCCAAGAAACCTCACCGTCAGTACGTTGGTTTTCTTCATCGAAATCCGTAAAAAAGGTCTCTTTGTCCTCTGTGACATCCATTGTTGATGGTTTGAA GAAGTTGTATCTTCAAAAACTGAAGCCATTGGAAGTTGCTTATCGATTCAATGACTTTGTATCTCCTCTATTGACCAATAGTGATTTTGATTGCAAACCC ATGGTTATGCTATTGGGCCAGTACTCCACAGGGAAAACAACATTCATTAAACATCTACTTAAAACTAGCTATCCAGGGTCTCATATTGGACCTGAACCTA CCACAGACAGATTTGTTGTTGTTATGTCTGGACCAGATGAAAGAAGTATTCCTGGAAATACTGTTGCAGTTCAAGCAGACATGCCTTTTAGTGGATTAAC AACTTTTGGAACTGCATTTTTGTCGAAATTTGAATGTTCCCAAATGCCGCATCCACTGTTGGAGCATATTACATTTGTAGACTCACCTGGAGTGTTATCT GGAGAAAAGCAACGAATTCACCGGTCTTATGATTTTACGGGTGTCACGTCATGGTTTGCTTCAAAGTGTGACCTTATTCTGCTTCTCTTCGATCCTCACA AACTTGATGTCAGTGATGAGTTCAAGCGTGTGATTGCATCTCTACGTGGACATGACGATAAGATTAGGGTTGTTCTTAACAAGGCAGACCAAGTGGATAC TCAACAACTAATGAGAGTCTATGGAGCCTTGATGTGGTCATTGGGAAAAGTTCTTAATACTCCTGAAGTTATGCGTGTCTATATAGGCTCATTCAACGAC AAACCAGTGAATGAAAATGCTGTTGGTCCCCTTGGGAGAGAGCTTTTTGAGAAAGAACAGTCTGACCTTCTTGCAGATCTTAAAGATATACCTAAGAAGG CTTGTGATCGCAGAATCAACGAATTTGTGAAACGGGCAAGGGCTGCAAAGATACATGCTTACATTATTAGCCACCTTAAGAAGGAGATGCCATCTATGAT GGGAAAAGCAAAGGCTCAGCAAAGACTAATCGATAATTTGGCAGAGGAATTTGGAAAGGTTCAGAGAGAGTTTCACTTACCACCAGGTGACTTCCCAAAT GTAGAGCAGTTCAAGGAGGTTCTAAGCGGCTACAACATCGACAAGTTTGAAAAATTGAAGCCGAAAATGATCCAAGCTGTTGATGAAATGCTCGGGTACG ACATCCCCGACCTGTTGAAGAACTTTAGGAACCCATACGACTAA
AA sequence Show only first row Show all	>Lus10043181 pacid=23168001 polypeptide=Lus10043181 locus=Lus10043181.g ID=Lus10043181.BGIv1.0 annot-version=v1.0 MEISPSPIGSCNKEFQKIYQEWFSYADADGDGRITGNDAIKFFGMSNLPRPDLKQVWAMADTKRQGYLGFKEFVASMQLVSLAQSGKEISNDIIHSDTVD FENLPPPMMEGLAELLAKQKKSSRLSDGDANGSPPQETSPSVRWFSSSKSVKKVSLSSVTSIVDGLKKLYLQKLKPLEVAYRFNDFVSPLLTNSDFDCKP MVMLLGQYSTGKTTFIKHLLKTSYPGSHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLS GEKQRIHRSYDFTGVTSWFASKCDLILLLFDPHKLDVSDEFKRVIASLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFND KPVNENAVGPLGRELFEKEQSDLLADLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPSMMGKAKAQQRLIDNLAEEFGKVQREFHLPPGDFPN VEQFKEVLSGYNIDKFEKLKPKMIQAVDEMLGYDIPDLLKNFRNPYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	0	1
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	8.0	0.6854
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010028 [exp]	10.8	0.5889
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Lus10021577 [exp]	18.5	0.6536
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	18.7	0.6506
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	21.1	0.6571
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	24.7	0.6064
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	25.6	0.6691
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015054 [exp]	31.5	0.5838
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	37.4	0.6496
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10042908 [exp]	39.8	0.6038

Compare expression of checked genes

Lus10043181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.