Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55160 174 / 2e-58 ATSUMO2, SUMO2, SUM2 small ubiquitin-like modifier 2 (.1.2) AT4G26840 169 / 2e-56 ATSUMO1, SUMO1, SUM1 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) AT5G55170 98 / 5e-28 ATSUMO3, SUMO3, SUM3 small ubiquitin-like modifier 3 (.1) AT5G55856 92 / 9e-26 Ubiquitin-like superfamily protein (.1) AT5G48710 83 / 7e-22 Ubiquitin-like superfamily protein (.1) AT2G32765 78 / 5e-20 ATSUMO5, SUM5 SUMO 5, small ubiquitinrelated modifier 5 (.1) AT5G48700 69 / 1e-16 Ubiquitin-like superfamily protein (.1) AT5G55855 47 / 2e-08 Ubiquitin-like superfamily protein (.1) AT1G68185 47 / 1e-07 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032560 [exp] 205 / 1e-70 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032561 [exp] 203 / 8e-70 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10043184 [exp] 134 / 1e-42 AT5G55160 108 / 2e-32 small ubiquitin-like modifier 2 (.1.2) Lus10022539 [exp] 61 / 7e-14 AT5G55160 61 / 5e-14 small ubiquitin-like modifier 2 (.1.2) Lus10026174 [exp] 62 / 1e-12 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1) Lus10000234 [exp] 49 / 4e-08 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10034627 [exp] 49 / 4e-08 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10035259 [exp] 49 / 5e-08 AT1G68185 156 / 3e-47 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158300 [exp] 174 / 3e-58 AT5G55160 171 / 5e-57 small ubiquitin-like modifier 2 (.1.2) Potri.002G224800 [exp] 172 / 1e-57 AT5G55160 172 / 3e-57 small ubiquitin-like modifier 2 (.1.2) Potri.002G224700 [exp] 171 / 6e-57 AT4G26840 170 / 1e-56 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) Potri.014G190300 [exp] 166 / 4e-55 AT5G55160 168 / 7e-56 small ubiquitin-like modifier 2 (.1.2) Potri.010G118900 [exp] 48 / 7e-08 AT1G68185 164 / 7e-51 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF11976 [flax] [poplar] Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like
Representative CDS sequence Show only first row Show all	>Lus10043185 pacid=23167953 polypeptide=Lus10043185 locus=Lus10043185.g ID=Lus10043185.BGIv1.0 annot-version=v1.0 ATGTCAGGAGTCACCAACCAGGAGGAAGAGAAGAAGCCGGCAGATCAGGGAGCTCACATCAACCTCAAGGTCAAGGGCCAGGATGGGAATGAAGTCTTCT TCAGGATCAAGAGGAGCACCCAATTGAAGAAGCTCATGGGTGCATATTGTGACCGTCAGTCTGTTGACCTCAACGCCATTGCCTTCTTGTTTGATGGCCG CAGACTCCGCGCCGAGCAGACTCCAGATGAGCTAGAGATGGAGGATGGAGATGAAATAGATGCGATGCTCCATCAGACGGGTGGTGGTGCGAGTGTCTAG
AA sequence Show only first row Show all	>Lus10043185 pacid=23167953 polypeptide=Lus10043185 locus=Lus10043185.g ID=Lus10043185.BGIv1.0 annot-version=v1.0 MSGVTNQEEEKKPADQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMGAYCDRQSVDLNAIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGASV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	0	1
					Lus10031351 [exp]	1.4	0.8885
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	1.4	0.8412
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	1.7	0.8379
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	3.5	0.8318
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	4.6	0.8098
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	6.0	0.7817
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028326 [exp]	6.1	0.7411
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10028250 [exp]	6.2	0.7780
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043184 [exp]	7.7	0.7989
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	8.9	0.8094

Compare expression of checked genes

Lus10043185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.