Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 635 / 0 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 549 / 0 HXXXD-type acyl-transferase family protein (.1) AT3G48720 536 / 0 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 250 / 2e-78 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G03390 244 / 5e-76 HXXXD-type acyl-transferase family protein (.1) AT1G27620 240 / 1e-74 HXXXD-type acyl-transferase family protein (.1) AT1G65450 231 / 8e-71 HXXXD-type acyl-transferase family protein (.1.2.3) AT3G03480 215 / 6e-65 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G17540 206 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT5G57840 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032554 [exp] 880 / 0 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 605 / 0 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 422 / 2e-145 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 421 / 7e-145 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 424 / 2e-144 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 414 / 5e-142 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 410 / 8e-141 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 408 / 1e-139 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 365 / 2e-123 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100800 [exp] 687 / 0 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 661 / 0 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 547 / 0 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 371 / 2e-125 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G003000 [exp] 268 / 2e-85 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 268 / 3e-85 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 263 / 3e-83 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 263 / 4e-83 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 259 / 5e-82 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 259 / 6e-82 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10043189 pacid=23168183 polypeptide=Lus10043189 locus=Lus10043189.g ID=Lus10043189.BGIv1.0 annot-version=v1.0 ATGGCTGATCATGAAGCTCCAACCCAAGTAGCACTCAACGTCACTCGCAAAGAGCCCACTCTGGTTCCTCCAGCAGAGGAAACCGACAAAGGCCACTACT TTCTGTCCAACCTGGACCAGAACATCGCCGTCATAGTCCGTACCATCTACTGTTTCAAGTCCGAAACCAGAGGAAACGAAGATTCCGCCGAGGTCATCAA GGATGCGCTTTCCAAAGTCCTTGTACACTACTACCCTTTGGCCGGACGACTCACTCTGACCCCCGACATGAAGCTCATTGTCGACTGCTCTGGCGGCGCT GATCAAGGTGCTGTCTTTGTCGAGGCAGATGCCGATTGCGACGTTTCGGGGATTGGAGACATCACGAAGCCTGATCCCGTCTCTCTTGAGAAGCTTGTCT ATGACATTCCTGGTGCTCAGAACATTCTCCAGATCCCACCTCTCGCCGTTCAGGTAACGAGGTTCAAGTGTGGAGGATTCGTCATAGGCTTATGCATGAA CCACTGCATGTTCGACGGAATCGGAGCCATGGAGTTCGTCAACTCATGGGGAGAAACTGCCAGAGGAAATCCACTAAGCGTCCCACCGTTCCTCGACAGA ACAATCCTCAAAGCCCGAATCCCACCGCAAATTGATAACCCGCATCACGAATTCGCCCAAATCGAAGACCTATCCAACATAGCAAAACTGTACGATGAGG AAGACATGCTCTACAGGTCATTCTGCTTCGACCCAGAAAAGCTCCAGCGCGTGAAGTCCAAAGCACTCGAAGACGCGTCACTACCAAAATGCACAACCTT CGAGGCCCTCTCCGCATTCGTATGGAAATGCAGGACGCAGGCGTTGAACCTGCTGCCACATCAGCAGACCAAGCTGTTATTTGCCGTGGATGGCAGGGGT AGATTCGTCCCTCCAATCCCTCAGGGGTATTTCGGGAACGCGATCGTGCTCACGAACTCGCTCTGCGAAGCAGGGGAGATCGTCGAAAACGACCTGTCGT TTGCGGTGAAGCGAGTTCAGGAAGCGGTTAAGATGGTCGACGACGGTTATATGAGATCGGCGATTGACTATTTTGAGACGACGAGGGCTAGGCCGTCGCT GGCGGCCACGCTTCTGATAACTACTTGGTCGAGGTTGTCGTTTCACACTACGGATTTCGGGTGGGGGGAGCCGACGGTTTCGGGGCCGGTGGCTCTGCCG GAGAAGGAAGTGATTCTGTTCCTTTCTCACGGGAAAGAAAGGAAGAGCGTGAATGTGCTTCTGGGTCTTCCTTCTTGTGCGATGAAGACTTTTGAATCAC TCATATGGGAATGA
AA sequence Show only first row Show all	>Lus10043189 pacid=23168183 polypeptide=Lus10043189 locus=Lus10043189.g ID=Lus10043189.BGIv1.0 annot-version=v1.0 MADHEAPTQVALNVTRKEPTLVPPAEETDKGHYFLSNLDQNIAVIVRTIYCFKSETRGNEDSAEVIKDALSKVLVHYYPLAGRLTLTPDMKLIVDCSGGA DQGAVFVEADADCDVSGIGDITKPDPVSLEKLVYDIPGAQNILQIPPLAVQVTRFKCGGFVIGLCMNHCMFDGIGAMEFVNSWGETARGNPLSVPPFLDR TILKARIPPQIDNPHHEFAQIEDLSNIAKLYDEEDMLYRSFCFDPEKLQRVKSKALEDASLPKCTTFEALSAFVWKCRTQALNLLPHQQTKLLFAVDGRG RFVPPIPQGYFGNAIVLTNSLCEAGEIVENDLSFAVKRVQEAVKMVDDGYMRSAIDYFETTRARPSLAATLLITTWSRLSFHTTDFGWGEPTVSGPVALP EKEVILFLSHGKERKSVNVLLGLPSCAMKTFESLIWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10043189 [exp]	0	1
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	3.9	0.8454
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006908 [exp]	6.9	0.8209
					Lus10014682 [exp]	10.2	0.8136
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	10.6	0.8011
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	31.1	0.7931
AT5G25530			DNAJ heat shock family protein...		Lus10021961 [exp]	36.7	0.6973
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	46.6	0.7662
					Lus10033358 [exp]	46.7	0.7727
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	47.5	0.7603
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040341 [exp]	49.5	0.7594

Compare expression of checked genes

Lus10043189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.